FRiP function

Calculate fraction of reads in peaks per cell

FRiP(object, assay, total.fragments, col.name = "FRiP", verbose = TRUE)

Arguments

• object: A Seurat object
• assay: Name of the assay containing a peak x cell matrix
• total.fragments: Name of a metadata column containing the total number of sequenced fragments for each cell. This can be computed using the CountFragments function.
• col.name: Name of column in metadata to store the FRiP information.
• verbose: Display messages

Returns

Returns a Seurat object

Examples

FRiP(object = atac_small, assay = 'peaks', total.fragments = "fragments")