GetCellsInRegion function

Get cells in a region

Extract cell names containing reads mapped within a given genomic region

GetCellsInRegion(tabix, region, cells = NULL)

Arguments

• tabix: Tabix object
• region: A string giving the region to extract from the fragments file
• cells: Vector of cells to include in output. If NULL, include all cells

Returns

Returns a list

Examples

fpath <- system.file("extdata", "fragments.tsv.gz", package="Signac")
GetCellsInRegion(tabix = fpath, region = "chr1-10245-762629")