GetGRangesFromEnsDb function

Extract genomic ranges from EnsDb object

Pulls the transcript information for all chromosomes from an EnsDb object. This wraps crunch and applies the extractor function to all chromosomes present in the EnsDb object.

GetGRangesFromEnsDb(
  ensdb,
  standard.chromosomes = TRUE,
  biotypes = c("protein_coding", "lincRNA", "rRNA", "processed_transcript"),
  verbose = TRUE
)

Arguments

• ensdb: An EnsDb object
• standard.chromosomes: Keep only standard chromosomes
• biotypes: Biotypes to keep
• verbose: Display messages