SetMotifData function

Set motif data

Set motif matrix for given assay

SetMotifData(object, ...)

## S3 method for class 'Motif'
SetMotifData(object, slot, new.data, ...)

## S3 method for class 'ChromatinAssay'
SetMotifData(object, slot, new.data, ...)

## S3 method for class 'Seurat'
SetMotifData(object, assay = NULL, ...)

Arguments

• object: A Seurat object
• ...: Arguments passed to other methods
• slot: Name of slot to use
• new.data: motif matrix to add. Should be matrix or sparse matrix class
• assay: Name of assay whose data should be set

Returns

Returns a Seurat object

Examples

motif.obj <- SeuratObject::GetAssayData(
  object = atac_small[['peaks']], slot = "motifs"
)
SetMotifData(object = motif.obj, slot = 'data', new.data = matrix(1:2))
SetMotifData(
  object = atac_small[['peaks']], slot = 'data', new.data = matrix(1:2)
)
motif.matrix <- GetMotifData(object = atac_small)
SetMotifData(
object = atac_small, assay = 'peaks', slot = 'data', new.data = motif.matrix
)