VariantPlot function

Plot strand concordance vs. VMR

Plot the Pearson correlation between allele frequencies on each strand versus the log10 mean-variance ratio for the allele.

VariantPlot(
  variants,
  min.cells = 2,
  concordance.threshold = 0.65,
  vmr.threshold = 0.01
)

Arguments

• variants: A dataframe containing variant information. This should be computed using IdentifyVariants
• min.cells: Minimum number of high-confidence cells detected with the variant for the variant to be displayed.
• concordance.threshold: Strand concordance threshold
• vmr.threshold: Mean-variance ratio threshold