as.ChromatinAssay function

Convert objects to a ChromatinAssay

as.ChromatinAssay(x, ...)

## S3 method for class 'Assay'
as.ChromatinAssay(
  x,
  ranges = NULL,
  seqinfo = NULL,
  annotation = NULL,
  motifs = NULL,
  fragments = NULL,
  bias = NULL,
  positionEnrichment = NULL,
  sep = c("-", "-"),
  ...
)

Arguments

• x: An object to convert to class ChromatinAssay
• ...: Arguments passed to other methods
• ranges: A GRanges object
• seqinfo: A Seqinfo object containing basic information about the genome used. Alternatively, the name of a UCSC genome can be provided and the sequence information will be downloaded from UCSC.
• annotation: Genomic annotation
• motifs: A Motif object
• fragments: A list of Fragment objects
• bias: Tn5 integration bias matrix
• positionEnrichment: A named list of position enrichment matrices.
• sep: Characters used to separate the chromosome, start, and end coordinates in the row names of the data matrix