granges-methods function

Access genomic ranges for ChromatinAssay objects

Methods for accessing GRanges object information stored in a ChromatinAssay object.

## S4 method for signature 'ChromatinAssay'
granges(x, use.names = TRUE, use.mcols = FALSE, ...)

## S4 method for signature 'Seurat'
granges(x, use.names = TRUE, use.mcols = FALSE, ...)

Arguments

• x: A ChromatinAssay object
• use.names: Whether the names on the genomic ranges should be propagated to the returned object.
• use.mcols: Not supported for ChromatinAssay objects
• ...: Additional arguments

Returns

Returns a GRanges object

Functions

• granges(Seurat): method for Seurat objects

Examples

granges(atac_small)

See Also

• granges in the GenomicRanges package.
• ChromatinAssay-class