inter-range-methods function

Inter-range transformations for ChromatinAssay objects

The range, reduce, gaps, disjoin, isDisjoint, disjointBins methods are available for ChromatinAssay objects.

## S4 method for signature 'ChromatinAssay'
range(x, ..., with.revmap = FALSE, na.rm = FALSE)

## S4 method for signature 'Seurat'
range(x, ..., with.revmap = FALSE, na.rm = FALSE)

## S4 method for signature 'ChromatinAssay'
reduce(x, drop.empty.ranges = FALSE, ...)

## S4 method for signature 'Seurat'
reduce(x, drop.empty.ranges = FALSE, ...)

## S4 method for signature 'ChromatinAssay'
gaps(x, start = NA, end = NA)

## S4 method for signature 'Seurat'
gaps(x, start = NA, end = NA)

## S4 method for signature 'ChromatinAssay'
disjoin(x, ...)

## S4 method for signature 'Seurat'
disjoin(x, ...)

## S4 method for signature 'ChromatinAssay'
isDisjoint(x, ...)

## S4 method for signature 'Seurat'
isDisjoint(x, ...)

## S4 method for signature 'ChromatinAssay'
disjointBins(x, ...)

## S4 method for signature 'Seurat'
disjointBins(x, ...)

Arguments

• x: A ChromatinAssay object
• ...: Additional arguments
• with.revmap: See inter-range-methods in the IRanges packages
• na.rm: Ignored
• drop.empty.ranges: See ?inter-range-methods
• start, end: See ?inter-range-methods

Functions

• range(Seurat): method for Seurat objects
• reduce(ChromatinAssay): method for ChromatinAssay objects
• reduce(Seurat): method for Seurat objects
• gaps(ChromatinAssay): method for ChromatinAssay objects
• gaps(Seurat): method for Seurat objects
• disjoin(ChromatinAssay): method for ChromatinAssay objects
• disjoin(Seurat): method for Seurat objects
• isDisjoint(ChromatinAssay): method for ChromatinAssay objects
• isDisjoint(Seurat): method for Seurat objects
• disjointBins(ChromatinAssay): method for ChromatinAssay objects
• disjointBins(Seurat): method for Seurat objects

See Also

• inter-range-methods in the IRanges package.

• inter-range-methods in the GenomicRanges

  package

• ChromatinAssay-class