subset.Fragment function

Subset a Fragment object

Returns a subset of a Fragment-class object.

## S3 method for class 'Fragment'
subset(x, cells = NULL, ...)

Arguments

• x: A Fragment object
• cells: Vector of cells to retain
• ...: Arguments passed to other methods

Returns

Returns a subsetted Fragment object

Examples

fpath <- system.file("extdata", "fragments.tsv.gz", package="Signac")
cells <- colnames(x = atac_small)
names(x = cells) <- paste0("test_", cells)
frags <- CreateFragmentObject(path = fpath, cells = cells, verbose = FALSE, tolerance = 0.5)
subset(frags, head(names(cells)))

See Also

subset