Spatially Aware Cell-Cell Interaction Analysis
Find the spatial neighborhood Spot IDs
Perform a Deranged Shuffle of Cell Types
Perform Global Permutations
Perform Local and Regional Permutations
Identify Possible Ligand-Receptor Pairs for Cell-Cell Communication
Plot Localized Hotspot Pattern on Seurat Object
Plot Localized Hotspot Pattern
Plot SpaCCI Results on Chord Diagram
Plot SpaCCI Results on the heatmap Visualize inferred significant cell...
Plot SpaCCI Localized Interaction Strength Results
Plot SpaCCI Localized Interaction Results
Plot Localized Hotspot Strength Pattern
Plot Localized Hotspot Strength Pattern on Seurat Object
CellChat Database: Identify Possible Ligand-Receptor Pairs for Cell-Ce...
Identify Possible Ligand-Receptor Pairs for Cell-Cell Communication
Identify Possible Ligand-Receptor Pairs for Cell-Cell Communication
Identify Possible Ligand-Receptor Pairs for Cell-Cell Communication
Identify Possible Ligand-Receptor Pairs for Cell-Cell Communication
Select Closest Spatial IDs to a Center Point: this is used for permuta...
Run SpaCCI Analysis
Generate a Color Palette
Identify Possible Ligand-Receptor Pairs for Cell-Cell Communication
Infer Cell-Cell Interactions on a Global Scale
Infer Cell-Cell Interactions on a Local Scale
Infer Cell-Cell Interactions in a Specified Region
Provides tools for analyzing spatial cell-cell interactions based on ligand-receptor pairs, including functions for local, regional, and global analysis using spatial transcriptomics data. Integrates with databases like 'CellChat' <http://www.cellchat.org/>, 'CellPhoneDB' <https://www.cellphonedb.org/>, 'Cellinker' <https://www.rna-society.org/cellinker/index.html>, 'ICELLNET' <https://github.com/soumelis-lab/ICELLNET>, and 'ConnectomeDB' <https://humanconnectome.org/software/connectomedb/> to identify ligand-receptor pairs, visualize interactions through heatmaps, chord diagrams, and infer interactions on different spatial scales.