SqueakR1.3.0 package

An Experiment Interface for 'DeepSqueak' Bioacoustics Research

add_timepoint_data

Add Timepoint Data

add_to_experiment

Add Scored Data to Experiment Object

analyze_factor

Analyze Factor

autosqueakRpipeline

Fully-Automatic Experiment Creation

create_experiment

Create New Experiment

describe_experiment

Describe Experiment

plotClusters

3D Call Clusters (Custom Label) Plot

plotContours

2D Call Contours

plotCorrelations

Plot Correlation Matrix

plotDeltaHistogram

Plot Delta Frequency Histogram

plotDensitySplitByCustom

Plot Density Graph, Splitting Groups by Custom Label

plotDensitySplitByDuration

Plot Density Graph, Splitting Groups by Duration

plotDensitySplitByFrequency

Plot Density Graph, Splitting Groups by Frequency

plotDensityStackedByCustom

Plot Density Graph Stacked by Custom Labels

plotDensityStackedByDuration

Plot Density Graph Stacked by Duration

plotDensityStackedByFrequency

Plot Density Graph Stacked by Frequency

plotEthnogram

Plot Ethnogram

plotEthnogramSplitByTonality

Plot Tonality-colored Ethnogram

plotPrincipalBoxplot

Plot Principal Frequency Box-Plot

plotSummaryPDF

Export PDF

plotSunburstAnimals

Sunburst Plot for Animal Distribution

plotSunburstExperimenters

Sunburst Plot for Experimenter Distribution

plotSurface

3D Surface Plot for Call Datasets

remove_experiment_data

Remove Data from Experiment File

save_experiment

Save Experiment Locally

score_timepoint_data

Score Timepoint Data

semisqueakRpipeline

Semi-Automatic Experiment Creation

SqueakR-package

SqueakR: An Experiment Interface for 'DeepSqueak' Bioacoustics Researc...

squeakrANOVA

Generate ANOVA tables for Detected Calls

squeakRDashboard

Launch SqueakR Dashboard

squeakrSummary

Summary Statistics for Experiment

unblind_all_ids

Decode Experiment IDs

unblind_data_id

Find Matching Experiment ID

unblind_data_name

Find Matching Experiment Name

update_experiment

Updates Experiment Object Metadata

Data processing and visualizations for rodent vocalizations exported from 'DeepSqueak'. These functions are compatible with the 'SqueakR' Shiny Dashboard, which can be used to visualize experimental results and analyses.

  • Maintainer: Simon Ogundare
  • License: MIT + file LICENSE
  • Last published: 2022-06-28