Retrieve Genomic and Clinical Data from CBioPortal Including TCGA Data
Core Query Engine
Samples Included in a List of Samples.
Fetch All Molecular Data for a Cancer Profile of Interest.
Retrieve the List of Cancer Studies Available at cbioportal.
Retrieve Cancer Types.
Retrieve Case List Available for a Specific Cancer Study.
Retrieve Clinical Information for a Cancer Study.
Retrieve All Gene Identifiers
Retrieve Genetic Profiles for a TCGA Study of Interest
Retrieve Molecular Data corresponding to a Genetic Profile of Interest...
Retrieve Mutation Data corresponding to a Genetic Profile of Interest.
Split Numeric Vectors in Groups.
Retrieve Genomic and Clinical Data from CBioPortal
The Cancer Genome Atlas (TCGA) is a program aimed at improving our understanding of Cancer Biology. Several TCGA Datasets are available online. 'TCGAretriever' helps accessing and downloading TCGA data hosted on 'cBioPortal' via its Web Interface (see <https://www.cbioportal.org/> for more information).