'TRFLP' Analysis and Matching Package for R
Absolute Minimum
Add Knowns To TRAMPknowns Databases
Automatically Build Knowns Database
Value Matching for Data Frames
Combine Two Objects
Combine TRAMPsamples Objects
Calculate Matrix of Distances between Peaks
Knowns Clustering
Load ABI Output Files
Plot a TRAMP Object
Summary Plot of Knowns Data
Plot a TRAMPsamples Object
Read ABI Output Files
Read/Write TRAMPknowns and TRAMPsamples Objects
Rebuild a TRAMP Object
Mark a TRAMP Match as Ignored
Create Presence/Absence Matrices from TRAMP Objects
TRFLP Analysis and Matching Program
Index (Subset) TRAMPsamples and TRAMPknowns Objects
TRAMPknowns Objects
The TRAMPR Package (TRFLP Analysis and Matching Package for R)
TRAMPsamples Objects
Interactively Alter a TRAMP Object
Matching terminal restriction fragment length polymorphism ('TRFLP') profiles between unknown samples and a database of known samples. 'TRAMPR' facilitates analysis of many unknown profiles at once, and provides tools for working directly with electrophoresis output through to generating summaries suitable for community analyses with R's rich set of statistical functions. 'TRAMPR' also resolves the issues of multiple 'TRFLP' profiles within a species, and shared 'TRFLP' profiles across species.