Using Tip Dates with Phylogenetic Trees in BEAST
List taxa names present in the BEAST input file
List taxa names present in the BEAST input file
List taxa names present in the BEAST input file
randomize dates among tips in the BEAST input file
randomize dates among tips in the BEAST input file
generates input files for leave-one-out analyses in BEAST
single Taxon out input file for leave-one-out analysis in BEAST
Tip dating of phylogenetic trees with BEAST
Assists performing tip-dating of phylogenetic trees with BEAST BEAST is a popular software for phylogenetic analysis. The package assists the implementation of various phylogenetic tip- dating tests using BEAST. It contains two main functions. The first one allows preparing date randomization analyses, which assess the temporal signal of a data set. The second function allows performing leave-one-out analyses, which test for the consistency between independent calibration sequences and allow pinpointing those leading to potential bias. The included tutorial provides detailed step-by-step instructions. An expanded description of the package can be found in article: Rieux, A. and Khatchikian, C.E. (2017), TIPDATINGBEAST: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST. Molecular Ecology Resources, 17: 608-613. <onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.12603>.