TreeDistPlot function

Plot a simple tree

Convenience plotting function used in vignettes and documentation.

TreeDistPlot(
  tr,
  title = NULL,
  bold = NULL,
  leaveRoom = FALSE,
  prune = integer(0),
  graft = integer(0),
  edge.color = "black",
  edge.width = NULL,
  ...
)

Arguments

• tr: A tree of class phylo, with leaves labelled as integers.
• title: main title for the plot.
• bold: Integer specifying which leaves to print in bold.
• leaveRoom: Logical specifying whether to leave space to print tree distances beneath the plotted tree.
• prune, graft: Integer vectors specifying which edges to highlight as pruned and grafted.
• edge.color: Additional parameter to plot.phylo; will be overridden by prune and graft as requested.
• edge.width, ...``: Additional parameters to plot.phylo.

Author(s)

Martin R. Smith

(martin.smith@durham.ac.uk)