Interactive Analysis of UCSC Xena Data
Visualize Gene and Drug Response Difference with CCLE Data
Heatmap for Correlation between Gene and Immune Signatures
Visualize Correlation between Gene and MSI (Microsatellite instability...
Visualize Gene and Drug-Target Association with CCLE Data
Show Available Hosts
A default setting for pan-cancer studies
Run Correlation between Two Variables and Support Group by a Variable
Analyze Association between Gene (Signature) and Drug Response with CC...
Analyze Difference of Drug Response (IC50 Value (uM)) between Gene (Si...
Run UCSC Xena Shiny App
Run correlation between two variables in a batch mode and support grou...
Run partial correlation
Fetch Identifier Value from Pan-cancer Dataset
Keep Only Columns Used for Sample Selection
Load Dataset Provided by This Package
Quick molecule analysis and report generation
Pipe Operator
download data for shiny general analysis
Get Molecule or Signature Data Values from Dense (Genomic) Matrix Data...
Query Single Identifier or Signature Value from Pan-cancer Database
Group TPC samples by build-in or custom phenotype and support filterin...
Obtain ToilHub Info for Single Molecule
Visualize Gene-Gene Correlation in a TCGA Cancer Type
TCGA Survival Analysis
TCGA: TMB (Tumor Mutation Burden) Data
Xena Shiny App
Visualize CCLE Gene Expression Correlation
Visualize CCLE Gene Expression
Visualize the distribution difference of samples after dimension reduc...
Visualize Gene-Gene Correlation in TCGA
Visualize Correlation between Gene and Pathway signature Score
Visualize Correlation between Gene and Tumor Stemness
Heatmap for Correlation between Gene and Tumor Immune Infiltration (TI...
Visualize Correlation between Gene and TMB (Tumor Mutation Burden)
Visualize Identifier-Identifier Correlation
Visualize the distribution difference of samples after Molecule Identi...
Visualize Comparison of an Molecule Identifier between Groups
Visualize Identifier Group Survival Difference
Visualize Correlation for Multiple Identifiers
Visualize Single Gene Expression in Anatomy Location
Visualize molecular profile in PCAWG
Visualize Gene-Gene Correlation in TCGA
Visualize Single Gene Univariable Cox Result in PCAWG
Visualize molecular profile difference between mutation and wild statu...
Visualize molecular profile difference between mutation and wild statu...
Visualize Pan-cancer TPM (tumor (TCGA) vs Normal (TCGA & GTEx))
Visualize Gene TPM in Single Cancer Type (Tumor (TCGA) vs Normal (TCGA...
Visualize Single Gene Univariable Cox Result from Toil Data Hub
Provides functions and a Shiny application for downloading, analyzing and visualizing datasets from UCSC Xena (<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Useful links