Visualize and Process Output from 'VirusHunterGatherer'
CombineHittables: Combine hittables.
ExportVirusDataFrame: Export processed hittables and summary stats dat...
ExportVirusGt: (Experimental) Export Graphical Tables
Export Virusparies Plots
Internal function to set default title and cutoff in boxplot function
ImportVirusTable: Import VirusHunterGatherer hittables into R
SummarizeViralStats: Generate summary stats outside of plot functions
VgConLenViolin: Generate a Violinplot of contig length for each group ...
VhgAddPhylum: extract Phylum information
VhgBoxplot: Generate box plots comparing E-values,identity or contig l...
VhgGetSubject: Process and Count Viral Subjects within Groups
VhgIdenFacetedScatterPlot: Create a scatter plot of Viral refseq ident...
VhgIdentityScatterPlot: Scatter plot for refseq identity vs -log10 of ...
VhgPreprocessTaxa: preprocess ViralRefSeq_taxonomy elements
VhgRunsBarplot: Generate a bar plot showing the number of data sets wi...
VhgRunsTable: Generate a gt summary table of unique runs for each viru...
VhgSubsetHittable: Filter VirusHunter and VirusGatherer hittables
VhgSumHitsBarplot: Generate a bar plot showing the sum of reads/contig...
VhgTabularRasa: Generate Custom Formatted Graphical Tables
Virusparies Package
A collection of tools for downstream analysis of 'VirusHunterGatherer' output. Processing of hittables and plotting of results, enabling better interpretation, is made easier with the provided functions.
Useful links