WayFindR0.5.0 package

Computing Graph Structures on WikiPathways

01-data

GPML GraphingR Data

02-util

Utility Functions to Parse GPML FIles

03-main

Converting GPML FIles to Igraph Objects

04-cycles

Finding Cycles in Biological Pathways

10-kgml-util

Utility Functions to Parse KGML FIles

11-coerce

Convert igraph object to Ragraph

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Converts pathways from 'WikiPathways' GPML format or 'KEGG' KGML format into 'igraph' objects. Includes tools to find all cycles in the resulting graphs and determine which ones involve negative feedback (inhibition).