Working with Dynamic Models for Agriculture and Environment
The Magarey model, taking a vector of parameters as argument
Generate a random plan as a data frame. Columns are parameters. Values...
Wrapper function to run the Magarey model multiple times (for multiple...
Define values of the parameters for the Maize model
The basic Maize model.
The basic Maize model for use with maize.simule
Plot dynamic output of Muchow Maize model.
Define values of the parameters for the Carcass model
The Carcass (growth of beef cattle) model with energy as input
The Carcass model function for use with carcass.EMI.simule
Wrapper function to run Carcass model on several animals with differen...
Wrapper function to the Carcass model for multiple sets of parameter v...
Plot output of a Classical SEIR model for plant disease
Plot output of a Classical SEIR model for plant disease
Leaf number function for Muchow et al. (1990) Maize model
Generate a random plan as a data frame. Columns are parameters. Values...
The Carcass (growth of beef cattle) model
Carrot weevil development model
The Cotton model (dynamic for numbers of Cotton fruiting points).
Define values of the parameters for the Epirice model
Maize model, with harvest index and yield from Muchow et al. (1990)
The Epirice model (Disease model for rice)
Wrapping function to run maize model on several site-years
Wrapper function to run Epirice multiple times (for multiple sets of i...
Wrapper function to run Maize model for multiple sets of input variabl...
Calculate effect of temperature on RUE for Maize
Wrapper function to run Maize model for multiple sets of parameter val...
Read weather data for Epirice (southern Asia weather)
Wrapper function to run Maize model for multiple sets of parameter val...
Calcule multiple goodness-of-fit criteria
The Exponential growth model of dynamic of population - another form
Wrapper function to run Maize model multiple times for multiple sets o...
Read weather data for the Maize model
The Maize model with additional state variable CumInt
The Exponential growth model of dynamic of population - with improved ...
The Exponential growth model of dynamic of population
The Maize model with temperature dependent RUE and CumInt
Calcule multiple goodness-of-fit criteria
The Maize model with temperature dependent RUE, CumInt and ear growth
Expanded leaf area function for Muchow et al. (1990) Maize model
Senescence function for Muchow et al. (1990) Maize model
Harvest index function for Muchow et al. (1990) Maize model
Calculate AIC, Akaike's Information Criterion
The CarbonSoil model - calculate daily values over designated time per...
The CarbonSoil model - calculate change in soil carbon for one year
The Lactation model
The Lactation model for use with lactation.calf.simule
Wrapper function to run the Lactation model for multiple sets of param...
Define values of the parameters for the Lactation model
The Lactation model with milking machine
The Lactation model for use with lactation.machine.simule
Define values of the parameters for the Magarey model
The Magarey model
The PopulationAge model (Population Dynamics with Age Classes) - matri...
The PopulationAge model (Population Dynamics with Age Classes) - ode f...
The PopulationAge model (Population Dynamics with Age Classes)
The PredatorPrey model (Predator-Prey Lotka-Volterra with logistic equ...
Build the q.arg argument for the FAST function (sensitivity analysis)
The SeedWeight model
Computation of threshold.measures
The Verhulst (logistic) model - calculate daily values over designated...
The Verhulst (logistic) model - calculate change for one day
Define values of the parameters for the WaterBalance model
WaterBalance model - Variant with another order of calculation and ARI...
WaterBalance model - calculate soil water over designated time period
WaterBalance model - calculate change in soil water for one day
Read weather data for the WaterBalance model (West of France Weather)
Define parameter values of the Weed model
The Weed model - calculate daily values over designated time period
Wrapper function to run the Weed model multiple times (for multiple se...
The Weed model - calculate change for one year
Classical SEIR model for plant diseases from Zadoks (1971)
Working with Dynamic Models for Agriculture and Environment
R package accompanying the book Working with dynamic models for agriculture and environment, by Daniel Wallach (INRA), David Makowski (INRA), James W. Jones (U.of Florida), Francois Brun (ACTA). 3rd edition 2018-09-27.