aae.pop0.2.0 package

Flexible Population Dynamics Simulations

aae.pop

aae.pop: flexible simulation of multispecies population dynamics

add_remove

Specify additions or removals in models of population dynamics

covariates

Specify covariate dependence in models of population dynamics

density_dependence

Specify density dependence in models of population dynamics

density_functions

Common forms of density dependence

dispersal

Specify dispersal between populations in a metapopulation model

dynamics

Create and update population dynamics objects

emps

Calculate expected minimum population size (EMPS) for a simulate obj...

exps

Calculate expected population size for a simulate object based on ge...

get_cdf

Calculate the cumulative distribution function of a summary statistic ...

get_pdf

Calculate the probability density of a summary statistic across all it...

masks

Isolate elements of population dynamics models

metapopulation

Create a metapopulation dynamics object

multispecies

Create a population dynamics object with multiple species

pairwise_interaction

Specify interactions between two species

pr_extinct

Calculate (quasi-)extinction risk for a simulateobject

replicated_covariates

Specify replicate-specific covariate dependence in models of populatio...

risk_curve

Calculate (quasi-)extinction risk at multiple thresholds for a `simula...

rng

Random number generators not available in existing R packages

simulate

Simulate single or multispecies population dynamics in R

stochasticity

Specify environmental and demographic stochasticity in models of popul...

updaters

Functions for a single time-step update

Simulate population dynamics from realistically complex matrix population models in a plug-and-play fashion. Supports aspatial and spatially implicit models with one or more species and time-varying covariates, stochasticity, density dependence, additions or removals of individuals, interspecific interactions, and metapopulations.

  • Maintainer: Jian Yen
  • License: Apache License 2.0
  • Last published: 2026-01-31