Analysis of Diversity
Apportionment of Parametric Indices of Diversity
Apportionment of Parametric Indices of Phylogenetic Diversity
tools:::Rd_package_title("adiv")
Hierarchical Partitioning of Evolutionary and Ecological Patterns in t...
Multiple-Site Dissimilarity Measure for Species Presence/Absence Data
Plot-to-plot functional or phylogenetic dissimilarity and uniqueness
Algorithmic index of plot-to-plot functional (or phylogenetic) dissimi...
Matrices of Intra- and Inter-Specific Similarities
Crossed-DPCoA
Indicator species analysis in the framework of multivariate analysis o...
Decomposition of trait-based diversity along the nodes of a phylogenet...
Algorithmic index of plot-to-plot functional (or phylogenetic) dissimi...
Phylogenetic and Functional Similarity between Communities
Plot-to-Plot Functional or Phylogenetic Dissimilarity
Abundance-based measures of species' rarity, functional or phylogeneti...
Dissimilarity-based Species' Originality
Topology-based Species' Originality
Tree-based Species' Originality
Ultrametric Tree-based Species' Originality
Marczewski-Steinhaus Coefficient
Parametric Indices of Species Diversity
Plot-to-plot functional or phylogenetic dissimilarity
Functional or Phylogenetic Similarity between Species and Communities
Double similarity principal component analysis
Faith Phylogenetic Diversity
Apportionment of Diversity
Parametric Indices of Species Evenness
Evolutionary Correspondence Analysis
Pair-wise Phylogenetic Dissimilarities between Communities
A Family of Indices Dedicated to Pair-wise Phylogenetic Dissimilaritie...
Indices of Phylogenetic Diversity
Parametric Indices of Phylogenetic Diversity
Parametric Indices of Phylogenetic evenness
Evolutionary Non-Symmetric Correspondence Analysis
Evolutionary Principal Component analyses
Parametric Indices of Phylogenetic Uniqueness
Parametric Indices of Functional and Phylogenetic Diversity
Indices of functional imbalance
Plot-to-plot dissimilarity taking account of functional dissimilaritie...
Indices K, Kstar and Kw of Phylogenetic Signal
Nee and May's Optimizing Process
Maximal or Minimal Amount of Originality Saved under Optimal Condition...
Functional Dissimilarity Measures for Presence-Absence Data
Plots for phylogenetic tree and data
Mean Diversity along a Phylogenetic Tree
Quadratic Entropy
Biodiversity Measure that Includes Consistent Interspecific and Intras...
Amount of Evolutionary History Preserved when Random Species are Saved
Functional Rarefaction for Species Abundance Data
Pavoine et al. (2017) functional or phylogenetic entropy
Linking Patterns in Phylogeny, Traits, Abiotic Variables and Space
Indices of Species Diversity
Indices of Species Evenvess
Community-level phylogenetic (or functional) redundancy
Maximization of the Diversity Index TwoH
Functional Uniqueness and Functional Redundancy of Biological Communit...
Functions, data sets and examples for the calculation of various indices of biodiversity including species, functional and phylogenetic diversity. Part of the indices are expressed in terms of equivalent numbers of species. The package also provides ways to partition biodiversity across spatial or temporal scales (alpha, beta, gamma diversities). In addition to the quantification of biodiversity, ordination approaches are available which rely on diversity indices and allow the detailed identification of species, functional or phylogenetic differences between communities.