Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present
Identification of unique multilocus genotypes
Determine allele frequencies
Clustering of multilocus genotypes
Produce cascading style sheet (CSS) for HTML
Prepare a dataset for use with allelematch
Data sets to support the tutorials in the supplementary documentation ...
Produce a dissimilarity matrix for pairs of multilocus genotypes
Pairwise matching of multilocus genotypes
Identification of unique genotypes
Determine optimal parameter values for the identification of unique ge...
Tools for the identification of unique of multilocus genotypes when both genotyping error and missing data may be present; targeted for use with large datasets and databases containing multiple samples of each individual (a common situation in conservation genetics, particularly in non-invasive wildlife sampling applications). Functions explicitly incorporate missing data and can tolerate allele mismatches created by genotyping error. If you use this package, please cite the original publication in Molecular Ecology Resources (Galpern et al., 2012), the details for which can be generated using citation('allelematch'). For a complete vignette, please access via the Data S1 Supplementary documentation and tutorials (PDF) located at <doi:10.1111/j.1755-0998.2012.03137.x>.