Phylogenetic Methods for Multiple Gene Data
multidna Accessors
Add gap-only sequences for missing data
apex: Phylogenetic Methods for Multiple Gene Data
Concatenate genes into a single matrix
Pairwise distances for multiple gene data
Build phylogenies from multiple gene data
multidna constructor
multiphyDat constructor
multidna: class for multiple gene data
Convert from multidna into alignment (seqinr)
Convert multidna into genind
Conversions between multidna and multiphyDat
multiphyDat: class for multiple gene data
Display multidna objects
Read multiple DNA alignments
Remove gap-only sequences for missing data
Display multidna objects
Display multiphyDat objects
Subset multidna objects
Toolkit for the analysis of multiple gene data (Jombart et al. 2017) <doi:10.1111/1755-0998.12567>. 'apex' implements the new S4 classes 'multidna', 'multiphyDat' and associated methods to handle aligned DNA sequences from multiple genes.