aphylo-methods function

Plot and print methods for aphylo objects

## S3 method for class 'aphylo'
plot(
  x,
  y = NULL,
  prop = 0.15,
  node.type.col = c(dupl = "black", other = "gray"),
  node.type.size = c(dupl = 0, other = 0),
  rect.args = list(),
  as_ci = NULL,
  ...
)

Arguments

• x: An object of class aphylo.

• y: Ignored.

• prop: Numeric scalar between 0 and 1. Proportion of the device that the annotations use in plot.aphylo.

• node.type.col, node.type.size: Vectors of length 2. In the case of node.type.col the color of the duplication and other nodes. node.type.size

  sets the size of circles.

• rect.args: List of arguments passed to graphics::rect .

• as_ci: Integer vector. Internal use only.

• ...: Further arguments passed to ape::plot.phylo .

Returns

In the case of plot.aphylo, NULL.

Details

The plot.aphylo function is a wrapper of ape::plot.phylo .

Examples

set.seed(7172)
atree <- raphylo(20)
plot(atree)

See Also

Other aphylo methods: aphylo-class