apsimx2.8.0 package

Inspect, Read, Edit and Run 'APSIM' "Next Generation" and 'APSIM' Classic

add_column_apsim_met

Add a column to an object of class met

amp_apsim_met

Calculates attribute amp for an object of class met

apsim_example

Access Example APSIM Simulations

apsim_options

Setting some options specific to APSIM (7.x) Classic

apsim_version

Display available APSIM Classic and APSIM-X versions

apsim.options

Environment which stores APSIM options

apsim

Run an APSIM (7.x) Classic simulation

apsimx_example

Access Example APSIM-X Simulations

apsimx_filetype

Test file format for .apsimx files

available_water_content

Calculate available water content

apsimx_options

Setting some options for the package

apsimx_soil_profile

Create APSIM-X Soil Profiles

apsimx.options

Environment which stores APSIM-X options

apsimx

Run an APSIM-X simulation

as_apsim_met

Conversion from data frame to met object

auto_detect_apsim_examples

Auto detect where apsim examples are located

auto_detect_apsimx_examples

Auto detect where apsimx examples are located

carbon_stocks

Calculate soil carbon stocks

check_apsim_met

Check a met file for possible errors

check_apsimx

Partial checking of an apsimx file for possible issues.

compare_apsim_met

Compare two or more metfiles

compare_apsim_soil_profile

Compare two or more soil profiles

compare_apsim

Compare two or more apsim output objects

doy2date

Converts from doy to date

edit_apsim_replace_soil_profile

Edit APSIM Classic file with a replaced soil profile

edit_apsim_xml

Edit an APSIM (Classic) Simulation auxiliary xml file

edit_apsim

Edit an APSIM (Classic) Simulation

edit_apsimx_batch

Edit an APSIM-X (JSON) Simulation in Batch mode

edit_apsimx_replace_soil_profile

Edit APSIM-X file with a replaced soil profile

edit_apsimx_replacement

Edit a replacement component in an .apsimx (JSON) file

edit_apsimx

Edit an APSIM-X (JSON) Simulation

initialwater_parms

Helper function to supply additional Initial Soil Water parameters

extract_data_apsimx

Extract data from an .apsimx (JSON) file

extract_values_apsimx

Extract values from a parameter path

get_apsimx_json

fetches the json file for a specific model from APSIMX github

get_chirps_apsim_met

Get CHIRPS data for an APSIM met file

get_daymet_apsim_met

Get DAYMET data for an APSIM met file

get_daymet2_apsim_met

Get DAYMET data for an APSIM met file

get_gsod_apsim_met

Get GSOD data for an APSIM met file

get_iem_apsim_met

Get weather data from Iowa Environmental Ag Weather Stations

get_iemre_apsim_met

Get weather data from Iowa Environmental Mesonet Reanalysis

get_isric_soil_profile

Generate a synthetic APSIM soil profile from the ISRIC soil database

get_power_apsim_met

Get NASA-POWER data for an APSIM met file

get_ssurgo_soil_profile

Retrieve soil profile data and convert it to an object of class soil_p...

get_ssurgo_tables

Retrieve soil profile data and return a (list) with data frames (table...

get_worldmodeler_apsim_met

Obtain a weather APSIM met from the World Modeler database

get_worldmodeler_soil_profile

Obtain a synthetic APSIM soil profile from the World Modeler database

grep_json_list

grep but for json list

impute_apsim_met

Perform imputation for missing data in a met file

insert_replacement_node

Inserts a replacement node in a simple apsimx simulation file

inspect_apsim_xml

Inspect an APSIM Classic auxiliary (XML) file

inspect_apsim

Inspect an .apsim (XML) file

inspect_apsimx_json

Inspect an .apsimx or .json (JSON) file

inspect_apsimx_replacement

Inspect a replacement component in an .apsimx (JSON) file

inspect_apsimx

Inspect an .apsimx (JSON) file

mcmc.apsim.env

Environment to store data for apsim MCMC

mcmc.apsimx.env

Environment to store data for apsimx MCMC

napad_apsim_met

Pad a met file with NAs when there are date discontinuities

optim_apsim

Optimize parameters in an APSIM simulation

optim_apsimx

Optimize parameters in an APSIM Next Generation simulation

plot.met

Plot method for object of class met

print.met

Printer-friendly version of a metfile

read_apsim_all

Read all APSIM generated .out files in a directory

read_apsim_met

Read in an APSIM met file

read_apsim_soils

Read in a soils (XML) file into a list of soil_profile objects

read_apsim

Read APSIM generated .out files

read_apsimx_all

Read all APSIM-X generated .db files in a directory

read_apsimx

Read APSIM-X generated .db files

sens_apsim

Sensitivity Analysis for APSIM Next Generation simulation

sens_apsimx

Sensitivity Analysis for APSIM Next Generation simulation

soilorganicmatter_parms

Helper function to supply additional Soil Organic Matter parameters

soilwat_parms

Helper function to supply SoilWat parameters

solutes_parms

Helper function to supply additional Solute parameters

ssurgo2sp

Take in SSURGO csv files and create a soil profile

summary.met

Summary for an APSIM met file

swim_parms

Helper function to supply SWIM parameters

tav_apsim_met

Calculates attribute amp for an object of class met

tt_apsim_met

Calculates Thermal Time taking a met object

unit_conv

performs common unit conversions

view_apsim_xml

View an APSIM Classic auxiliary (XML) file

view_apsim

Viewing an APSIM Classic file interactively

view_apsimx

Viewing an APSIM-X file interactively

wop.h

Wheat example optimization results plus Hessian

wop

Wheat example optimization results

write_apsim_met

Write an APSIM met file

xargs_apsimx

Provide extra arguments for APSIM-X

The functions in this package inspect, read, edit and run files for 'APSIM' "Next Generation" ('JSON') and 'APSIM' "Classic" ('XML'). The files with an 'apsim' extension correspond to 'APSIM' Classic (7.x) - Windows only - and the ones with an 'apsimx' extension correspond to 'APSIM' "Next Generation". For more information about 'APSIM' see (<https://www.apsim.info/>) and for 'APSIM' next generation (<https://apsimnextgeneration.netlify.app/>).

  • Maintainer: Fernando Miguez
  • License: GPL-3
  • Last published: 2024-08-19