asbio1.9-7 package

A Collection of Statistical Tools for Biologists

pairw.fried.rd

Multiple pairwise comparison procedure to accompany a Friedman test.

pairw.kw.rd

Multiple pairwise comparison procedure to accompany a Kruskal-Wallis t...

agrostis.rd

Agrostis variabilis cover measurements

aids.rd

Aids and veterans dataset

alpha.div

Functions for calculating alpha diversity.

anm.ci.rd

Animation demonstrations of confidence intervals.

anm.coin

Animated demonstration of frequentist binomial convergence of probabil...

anm.cont.pdf.rd

Animated demonstration of density for a continuous pdf

anm.die.rd

Animated depiction of six-sided die throws.

anm.ExpDesign.rd

Animated depiction of experimental designs

anm.geo.growth.rd

Animated depictions of population growth

anm.loglik.rd

Animated plots of log-likelihood functions

anm.ls.rd

Animated plot of least squares function.

anm.ls.reg.rd

Animated plot of the least squares function.

anm.LV.rd

Animated depictions of Lotka-Volterra competition and exploitation mod...

anm.mc.bvn.rd

Animation of Markov Chain Monte Carlo walks in bivariate normal space

anm.samp.design

Animated demonstration of randomized sampling designs

anolis.rd

Anolis lizard contingency table data

anscombe.rd

Anscombe's quartet

ant.dew.rd

Ant honeydew data

AP.test.rd

Agresti-Pendergrast test

auc.rd

Area under a receiver operating characteristic (ROC) curve

bats.rd

Bat forearm length as a function of bat age

Bayes.disc.rd

Bayesian graphical summaries for discrete or categorical data.

bayes.lm.rd

Bayesian linear models with uniform priors

BCI.count.rd

Barro Colorado Island Tree Counts

BCI.plant.rd

Tree presence/absence data from Barro Colorado island

BDM.test.rd

Brunner-Dette-Munk test

beetle.rd

Wood boring beetle data

best.agreement

Determine agreement of two classifications

bin2dec.rd

Conversion of binary digits to decimal numbers

bombus.rd

Bombus pollen data.

bone.rd

Bone development data

book.menu.rd

Pulldown menus for 'asbio' interactive graphical functions

boot.ci.M.rd

Bootstrap CI of M-estimators differences of two samples

bootstrap.rd

A simple function for bootstrapping

bound.angle.rd

Angle of azimuth to a boundary.

bplot.rd

Barplots with error bars (including interval plots)

bromus.rd

Bromus tectorum dataset

bv.boxplot

Bivariate boxplots

bvn.plot.rd

Make plots of bivariate normal distributions

C.isotope.rd

Atmospheric carbon and D14C measurements

chi.plot

Chi plots for diagnosing multivariate independence.

chronic.rd

Chronic ailment counts for urban and rural women in Australia

ci.boot.rd

Bootstrap confidence intervals

ci.impt

Confidence interval for the product of two proportions

ci.median.rd

Confidence interval for the median

ci.mu.oneside.rd

One sided confidence interval for mu.

ci.mu

Z and t confidence intervals for mu.

ci.p.rd

Confidence interval estimation for the binomial parameter pi using fiv...

ci.prat.ak

Confidence intervals for ratios of proportions when the denominator is...

ci.prat.rd

Confidence intervals for the ratio of binomial and multinomial proport...

ci.sigma.rd

Confidence interval for sigma squared.

ci.strat.rd

Confidence intervals for stratified random samples.

cliff.sp.rd

Yellowstone NP cliff community data

ConDis.matrix.rd

Calculation and display of concordant and discordant pairs

crab.weight.rd

crab gill and body weight data

crabs.rd

Agresti crabs dataset

D.sq

Mahalanobis distance for two sites using a pooled covariance matrix

death.penalty.rd

Florida state death penalty data

deer.296.rd

Mule deer telemetry data

deer.rd

Maternal deer data

depression.rd

Hamilton depression scores before and after drug treatment

DH.test.rd

Doornik-Hansen test for multivariate normality.

dO2.rd

Dissolved levels in locations above and below a town

drugs.rd

Contingency data for high school marijuana, alcohol, and cigarette use

eff.rbd.rd

Efficiency of a randomized block design compared to a CRD

enzyme.rd

Enzymatic rate data for the phospholipase protein ExoU

ES.May.rd

May's effective specialization index

Fbird.rd

Frigatebird drumming frequency data

fire.rd

Fire data from Yellowstone National Park

fly.sex.rd

Fly sex and longevity

frog.rd

Australian frog calls following fire

fruit.rd

Fruit weight data from Littell et al. (2002)

G.mean

Geometric mean

g.test.rd

Likelihood ratio test for tabular data

garments.rd

Garment Latin square data from Littell et al. (2002)

Glucose2.rd

Glucose Levels Following Alcohol Ingestion

goats.rd

Mountain goat data from Yellowstone National Park

grass.rd

Agricultural factorial design

H.mean

Harmonic mean

heart.rd

Heart rate data from Milliken and Johnson (2009)

HL.mean

Hodges-Lehman estimator of location

huber.mu.rd

Huber M-estimator of location

huber.NR

Huber M-estimator iterative least squares algorithm

huber.one.step.rd

Huber one step M-estimator

illusions.rd

Visual illusions illustrating human perception errors.

ipomopsis.rd

Ipomopsis fruit yield data

joint.ci.bonf.rd

Calculates joint confidence intervals for parameters in linear models ...

Kappa.rd

Calculates kappa statistic and other classification error statistics

km

Kaplan-Meier survivorship.

Kullback.rd

Kullback test for equal covariance matrices.

larrea.rd

Creosote bush counts

lm.select.rd

AIC, AICc, BIC, Mallow's Cp, and PRESS evaluation of linear models

magnets.rd

Magnet pain relief data

MC.test

Monte Carlo hypothesis testing for two samples.

MCfunctions.rd

Simple functions for MCMC demonstrations

mcmc.norm.hier.rd

Gibbs sampling of normal hierarchical models

ML.k.rd

Maximum likelihood algorithm for determining the binomial dispersal co...

Mode.rd

Sample mode

modlevene.test

Modified Levene's test

montane.island.rd

Mountain island biogeographic data

mosquito.rd

Mosquito wing length data

MS.test

Mack-Skillings test

myeloma.rd

Patient responses to myeloma drug treatments

near.bound.rd

Nearest neighbor boundary coordinates

one.sample.t.rd

One sample t-test

one.sample.z

One sample z-test

paik.rd

Paik diagrams

pairw.anova

Conducts pairwise post hoc and planned comparisons associated with an ...

pairw.oneway

Welch tests controlled for simultaneous inference

panel.cor.res

Functions for customizing correlation matrices

partial.R2.rd

Partial correlations of determination in multiple regression

partial.resid.plot.rd

Partial residual plots for interpretation of multiple regression.

PCB.rd

PCBs and herring egg thickness

perm.fact.test.rd

Permutation test for two and three way factorial designs

pika.rd

Nitrogen content of soils under pika haypiles

plantTraits.rd

Plant traits for 136 species

plot.pairw.rd

Plots confidence intervals and/or bars with letters indicating signifi...

plotAncova.rd

Creates plots for one way ANCOVAs

plotCI.reg.rd

Plots a simple linear regression along with confidence and prediction ...

polyamine.rd

Polyamine data from Hollander and Wolfe (1999)

potato.rd

Fisher's Rothamsted potato data

power.z.test

Power analysis for a one sample z-test

press.rd

prediction sum of squares

Preston.dist

Preston diversity analysis

prostate.rd

Prostate cancer data

prp.rd

Perpendicularity

pseudo.v

Jacknife pseudo-values

qq.Plot

Normal quantile plots for single or multiple factor levels

r.bw.rd

Biweight midvariance, and biweight midcorrelation.

r.dist.rd

Visualize the sampling distribution of Pearson's product moment correl...

R.hat.rd

R hat MCMC convergence statistic

r.pb.rd

Percentage bend correlation

refinery.rd

Refinery CO dataset

rinvchisq.rd

Random draws from a scaled inverse chi-square distribution

samp.dist.mech.rd

Animated representation of sampling distribution basics

samp.dist.rd

Animated and/or snapshot representations of a statistic's sampling dis...

sc.twin.rd

Matched pairs schizophrenia data

se.jack.rd

Jackknife standard error from a set of pseudovalues

see.accPrec.tck.rd

Interactive depiction of precision and accuracy

see.ancova.tck.rd

Visualize ANCOVA mechanics

see.anova.tck.rd

Interactive depiction of the ANOVA mechanism

see.cor.range.tck.rd

Depict the effect of range on correlation

see.exppower.tck.rd

Visualize exponential power functions

see.HW.rd

Visualize the Hardy Weinberg equilibrium

see.lma.tck.rd

ANOVA linear models

see.lmr.tck.rd

Regression linear model derivation from linear algebra

see.lmu.tck.rd

Unbalanced and balanced linear models

see.logic.rd

Interactive worksheet for logical and fallacious arguments

see.M.rd

Visualization of the M-estimation function

see.mixedII.rd

Depiction of the effect of random level selection on inferences concer...

see.mnom.tck.rd

Interactive depiction of the multinomial distribution

see.move.rd

Interactive visualization of least squares regression.

see.nlm.rd

Visualize important non-linear functions

see.norm.tck.rd

Visualize pdfs

see.power.rd

Interactive depiction of type I and type II error and power

see.rEffect.tck.rd

Visualize random effects model

see.regression.tck.rd

Demonstration of regression mechanics

see.roc.tck.rd

Interactive depiction of ROC curves

see.smooth.tck.rd

Interactive smoother demonstrations

see.ttest.tck

Visualize t-tests

see.typeI_II.rd

Interactive depiction of type I and II error

selftest.se.tck1.rd

Interactive self-testing questions

Semiconductor.rd

Split plot computer chip data from Littell et al. (2006)

shad.rd

American gizzard shad data

shade.norm

Shading functions for interpretation of pdf probabilities.

shade.norm.tck

GUI display of probability

skew.kurt.rd

Sample skewness and kurtosis

so2.us.cities.rd

SO2 data for 32 US cities with respect to 6 explanatory variables

stan.error

Variance and standard error estimators for the sampling distribution o...

trag.rd

Salsify height dataset

transM.rd

Transition matrix analysis

trim.me

Trim data

trim.ranef.test.rd

Robust test for random factors using trimmed means.

trim.test.rd

Robust one way trimmed means test.

tukey.add.test.rd

Tukey's test of additivity.

veneer.rd

Veneer data from Littell et al. (2002)

Venn.rd

Venn probability diagrams for an event with two outcomes

vs.rd

Scandinavian site by species community matrix

wash.rich.rd

Species richness and environmental variables from Mt Washburn

webs.rd

Spider web length data

wheat.rd

Agricultural randomized block design

whickham.rd

Whickham contingency table data for smokers and survivorship

wildebeest.rd

Wildebeest carcass categorical data

win

Winsorize data

Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.

  • Maintainer: Ken Aho
  • License: GPL (>= 2)
  • Last published: 2024-01-19