babelmixr20.1.5 package

Use 'nlmixr2' to Interact with Open Source and Commercial Software

as.nlmixr2

Convert an object to a nlmixr2 fit object

babel.poped.database

Expand a babelmixr2 PopED database

babelBpopIdx

Get the bpop_idx by variable name for a poped database created by `bab...

bblDatToMonolix

Convert nlmixr2-compatible data to other formats (if possible)

dot-popedCluster

Internal function to use with PopED to run PopED in parallel on Window...

dot-popedF

Get the function value from the rxode2 solve

dot-popedFree

Free Poped memory (if any is allocated)

dot-popedRxRunSetup

Setup poped if needed

dot-popedSetup

Setup the PopED environment

dot-popedSolveIdME

Solve poped problem for appropriate times with single/multiple endpoin...

dot-popedW

Get the weight from the rxode2 solve

dot-setupPopEDdatabase

Setup the poped database

getStandardColNames

Determine standardized rxode2 column names from data

modelUnitConversion

Unit conversion for pharmacokinetic models

monolixControl

Monolix Controller for nlmixr2

nlmixr2Est.pknca

Estimate starting parameters using PKNCA

nmGetDistributionMonolixLines

This is a S3 method for getting the distribution lines for a base rxod...

nmGetDistributionNonmemLines

This is a S3 method for getting the distribution lines for a base rxod...

nonmemControl

NONMEM estimation control

pkncaControl

PKNCA estimation control

popedControl

Control for a PopED design task

popedGetMultipleEndpointModelingTimes

Get Multiple Endpoint Modeling Times

popedMultipleEndpointParam

Populates Multiple Endpoint Parameters for internal solving

popedMultipleEndpointResetTimeIndex

Reset the Global Time Indexer for Multiple Endpoint Modeling

reexports

Objects exported from other packages

rxToMonolix

Convert RxODE syntax to monolix syntax

rxToNonmem

Convert RxODE syntax to NONMEM syntax

simplifyUnit

Simplify units by removing repeated units from the numerator and denom...

Run other estimation and simulation software via the 'nlmixr2' (Fidler et al (2019) <doi:10.1002/psp4.12445>) interface including 'PKNCA', 'NONMEM' and 'Monolix'. While not required, you can get/install the 'lixoftConnectors' package in the 'Monolix' installation, as described at the following url <https://monolixsuite.slp-software.com/r-functions/2024R1/installation-and-initialization>. When 'lixoftConnectors' is available, 'Monolix' can be run directly instead of setting up command line usage.

  • Maintainer: Matthew Fidler
  • License: GPL (>= 3)
  • Last published: 2024-11-06