Process the 'BEAST2' output dependent on 'BEAST2' package specifics
parse_beast2_output(out, inference_model)
out
: a list with the complete babette output, with elements:
output
textual output of a 'BEAST2' runinference_model
: a Bayesian phylogenetic inference model, as returned by create_inference_model
complete babette output with added attributes, which depends on the 'BEAST2' package.
marg_log_lik
the marginal log likelihood estimatemarg_log_lik_sd
the standard deviation around the estimateestimates
the parameter estimates created during the marginal likelihood estimationtrees
the trees created during the marginal likelihood estimationRichèl J.C. Bilderbeek
Useful links