bayess1.6 package

Bayesian Essentials with R

gibbsnorm

Gibbs sampler for a generic mixture posterior distribution

hmflatlogit

Metropolis-Hastings for the logit model under a flat prior

hmflatloglin

Metropolis-Hastings for the log-linear model under a flat prior

hmflatprobit

Metropolis-Hastings for the probit model under a flat prior

hmhmm

Estimation of a hidden Markov model with 2 hidden and 4 observed state...

hmmeantemp

Metropolis-Hastings with tempering steps for the mean mixture posterio...

hmnoinflogit

Metropolis-Hastings for the logit model under a noninformative prior

ardipper

Accept-reject algorithm for the open population capture-recapture mode...

ARllog

log-likelihood associated with an AR(p) model defined either through i...

ARmh

Metropolis--Hastings evaluation of the posterior associated with an AR...

bank

bank dataset (Chapter 4)

BayesReg

Bayesian linear regression output

caterpillar

Pine processionary caterpillar dataset

datha

Non-standardised Licence dataset

Dnadataset

DNA sequence of an HIV genome

eurodip

European Dipper dataset

Eurostoxx50

Eurostoxx50 exerpt dataset

gibbs

Gibbs sampler and Chib's evidence approximation for a generic univaria...

gibbs2

Gibbs sampler for the two-stage open population capture-recapture mode...

gibbs3

Gibbs sampling for the Arnason-Schwarz capture-recapture model

gibbsmean

Gibbs sampler on a mixture posterior distribution with unknown means

hmnoinfloglin

Metropolis-Hastings for the log-linear model under a noninformative pr...

hmnoinfprobit

Metropolis-Hastings for the probit model under a noninformative prior

isinghm

Metropolis-Hastings for the Ising model

isingibbs

Gibbs sampler for the Ising model

Laiche

Laiche dataset

logitll

Log-likelihood of the logit model

logitnoinflpost

Log of the posterior distribution for the probit model under a noninfo...

loglinll

Log of the likelihood of the log-linear model

loglinnoinflpost

Log of the posterior density for the log-linear model under a noninfor...

MAllog

log-likelihood associated with an MA(p) model

MAmh

Metropolis--Hastings evaluation of the posterior associated with an MA...

Menteith

Grey-level image of the Lake of Menteith

ModChoBayesReg

Bayesian model choice procedure for the linear model

normaldata

Normal dataset

pbino

Posterior expectation for the binomial capture-recapture model

pcapture

Posterior probabilities for the multiple stage capture-recapture model

pdarroch

Posterior probabilities for the Darroch model

plotmix

Graphical representation of a normal mixture log-likelihood

pottsgibbs

Gibbs sampler for the Potts model

pottshm

Metropolis-Hastings sampler for a Potts model with ncol classes

probet

Coverage of the interval (a,b)(a,b) by the Beta cdf

probitll

Log-likelihood of the probit model

probitnoinflpost

Log of the posterior density for the probit model under a non-informat...

rdirichlet

Random generator for the Dirichlet distribution

reconstruct

Image reconstruction for the Potts model with six classes

solbeta

Recursive resolution of beta prior calibration

sumising

Approximation by path sampling of the normalising constant for the Isi...

thresh

Bound for the accept-reject algorithm in Chapter 5

truncnorm

Random simulator for the truncated normal distribution

xneig4

Number of neighbours with the same colour

Allows the reenactment of the R programs used in the book Bayesian Essentials with R without further programming. R code being available as well, they can be modified by the user to conduct one's own simulations. Marin J.-M. and Robert C. P. (2014) <doi:10.1007/978-1-4614-8687-9>.

  • Maintainer: Jean-Michel Marin
  • License: GPL-2
  • Last published: 2024-03-06