create_bd_tree_prior function

Create a Birth-Death tree prior

Create a Birth-Death tree prior

create_bd_tree_prior( id = NA, birth_rate_distr = create_uniform_distr(), death_rate_distr = create_uniform_distr() )

Arguments

  • id: the ID of the alignment
  • birth_rate_distr: the birth rate distribution, as created by a create_distr function
  • death_rate_distr: the death rate distribution, as created by a create_distr function

Returns

a Birth-Death tree_prior

Examples

if (is_on_ci()) { bd_tree_prior <- create_bd_tree_prior() beast2_input_file <- get_beautier_tempfilename() create_beast2_input_file( input_filename = get_fasta_filename(), beast2_input_file, tree_prior = bd_tree_prior ) file.remove(beast2_input_file) remove_beautier_folder() }

See Also

An alignment ID can be extracted from its FASTA filename using get_alignment_id

Author(s)

Richèl J.C. Bilderbeek