Create a Birth-Death tree prior
create_bd_tree_prior( id = NA, birth_rate_distr = create_uniform_distr(), death_rate_distr = create_uniform_distr() )
id
: the ID of the alignmentbirth_rate_distr
: the birth rate distribution, as created by a create_distr
functiondeath_rate_distr
: the death rate distribution, as created by a create_distr
functiona Birth-Death tree_prior
if (is_on_ci()) { bd_tree_prior <- create_bd_tree_prior() beast2_input_file <- get_beautier_tempfilename() create_beast2_input_file( input_filename = get_fasta_filename(), beast2_input_file, tree_prior = bd_tree_prior ) file.remove(beast2_input_file) remove_beautier_folder() }
An alignment ID can be extracted from its FASTA filename using get_alignment_id
Richèl J.C. Bilderbeek
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