biodosetools3.7.2 package

'shiny' Application for Biological Dosimetry

AIC_from_data

Calculate AIC (Akaike's 'An Information Criterion')

bar_plots

Bar plots dosimetry

biodosetools-package

biodosetools package

calc.zValue.new

Calculate ZScore

calculate_aberr_IRR

Calculate IRR (this is the same as the Odds-Ratio calculation in IAEA2...

calculate_aberr_table

Calculate aberrations table

calculate_aberr

Aberration calculation functions

calculate_characteristic_limits

Characteristic limits function----------------------------------------...

calculate_genome_factor

Calculate genomic conversion factor

calculate_model_stats

Calculate model statistics

calculate_table

Calculate the characteristic limits table

calculate_trans_rate_manual

Calculate manual translocation rate

calculate_trans_rate_sigurdson

Calculate Sigurdson's translocation rate

calculate_yield_infimum

Calculate theoretical yield infimum

calculate_yield

Calculate yield from dose

correct_boundary

Correct boundary of irradiated fractions to be bounded by 0 and 1

correct_conf_int

Correct yield confidence interval

correct_negative_vals

Correct negative values

correct_yield

Correct yields if they are below the curve

curves_plot

Plot curves

DI_plot

Dispersion index

dose_boxplot

Boxplot dose estimates

dose_estimation_mx

Prepare data to dose estimate using mixed fields manual

estimate_hetero_mixed_poisson

Heterogeneous dose estimation (Mixed Poisson model)

estimate_partial_body_dolphin

Partial-body dose estimation (Dolphin's method)

estimate_whole_body_delta

Whole-body dose estimation (delta method)

estimate_whole_body_merkle

Whole-body dose estimation (Merkle's method)

fit_glm_method

Perform GLM (Generalised Linear Model) fitting

fit_maxlik_method

Perform max-likelihood optimization fitting

fit

Perform dose-effect fitting algorithm

fun.curve

Calculate curve

fun.estimate.criticality

Calculate absorbed dose for mixed fields exposure

generate_plot_and_download

Plot at the UI and save

get_deltamethod_std_err

Get standard errors using delta method

include_help

Include Markdown help

load_manual_data

Load manual data

load_rds_data

Load and show rds files

load_rmd_report

Load RMarkdown report

M_estimate

Calculate algB

pipe

Pipe operator

plot_deviation_all

Plot Deviaition from ref dose all blind samples

plot_estimated_dose_curve_mx

Criticality Plot

plot_estimated_dose_curve

Plot dose estimation curve

plot_fit_dose_curve

Plot fit dose curve

plot_interlab_deviation

Plot deviation

plot_interlab_v2

Plot zscore v2

plot_triage_interlab

Plot triage interlab

plot_triage

Plot triage

plot_zscore_all

Plot Z-scores all blind samples

prepare_maxlik_count_data

Prepare count data for max-likelihood optimization fitting

project_yield

Project yield into dose-effect fitting curve

protracted_g_function

Calculate protracted function G(x)G(x)

QHampel

Calculate QHampel

R_factor

Calculate R regression confidence factor

run_app

Run the Shiny Application

summary_curve_tables

Summary and curve tables

u_test_plot

U-test

update_outputs

Update dose estimation box with yield values

yield_boxplot

Boxplot yield

yield_error_fun

Calculate yield error

yield_fun

Calculate yield

A tool to perform all different statistical tests and calculations needed by Biological dosimetry Laboratories. Detailed documentation is available in <https://biodosetools-team.github.io/documentation/>.

  • Maintainer: Anna Frances-Abellan
  • License: GPL-3
  • Last published: 2025-12-16