biogrowth1.0.6 package

Generates functions for linear interpolation of environmental conditio...

Secondary Aryani model

Bilinear model with lag phase

Bilinear model with stationary phase

biogrowth: Modelling of Population Growth

Gamma factors for fitting secondary models

Calculates every gamma factor

Visual check of an initial guess of the model parameters

Basic check of parameters for primary models

Basic checks of secondary parameters

Model definition checks for predict_stochastic_growth

Model comparison and selection for growth models

Model comparison and selection for secondary growth models

Residuals of the coupled Baranyi model

Cost for the coupled model fitted in two-steps

Secondary Cardinal Parameter (CPM) model

Baranyi growth model

Distribution of times to reach a certain microbial count

DynamicGrowth class

A helper to build the primary models

A helper to build the secondary models

Growth fitting considering link between mu and lambda for the Baranyi-...

Fit dynamic growth models

Fitting microbial growth

Fit primary growth models

Fit growth models using MCMC

Fitting growth models to multiple dynamic experiments using MCMC

Fitting growth models to multiple dynamic experiments

Fit secondary growth models

FitCoupledGrowth class

FitDynamicGrowth class

FitDynamicGrowthMCMC class

FitIsoGrowth class

FitMultipleDynamicGrowth class

FitMultipleGrowthMCMC class

FitSecondaryGrowth class

Full Ratkowsky model

A helper for making the plots

Residuals of dynamic prediction

Residuals of isothermal prediction

Residuals of multiple dynamic predictions

Residuals of secondary models

GlobalGrowthComparison class

GlobalGrowthFit class

GrowthComparison class

GrowthFit class

GrowthPrediction class

GrowthUncertainty class

Secondary model for inhibitory compounds

Test of DynamicGrowth object

Test of FitDynamicGrowth object

Test of FitDynamicGrowthMCMC object

Test of FitIsoGrowth object

Test of FitMultipleDynamicGrowth object

Test of FitMultipleDynamicGrowthMCMC object

Test of FitSecondaryGrowth object

Test of GlobalGrowthFit object

Test of GrowthFit object

Test of GrowthPrediction object

Test of GrowthUncertainty object

Test of IsothermalGrowth object

Test of MCMCgrowth object

Test of StochasticGrowth object

Isothermal Baranyi model without lag phase

Isothermal Baranyi model without stationary phase

Isothermal Baranyi model

Reparameterized Gompertz model

IsothermalGrowth class

Q0 from lag phase duration

Logistic growth model

Loglinear model

Initial guesses for the secondary model of one factor

Initial guesses for fitting primary growth models

Initial guesses for the parameters of a secondary model

MCMCgrowth class

Predictions of the coupled Baranyi model

Prediction of lambda for the coupled model

Prediction of the square root of mu for the coupled model

Growth under dynamic conditions

Isothermal growth with parameter uncertainty

Prediction of microbial growth

Isothermal microbial growth

Stochastic growth of MCMC fit

Deprecated isothermal growth with parameter uncertainty

Generic for calculating predictions with uncertainty from fits

Metainformation of primary growth models

Lag phase duration from Q0

Residuals for lambda for the coupled model

Residuals for the square root of mu for the coupled model

Richards growth model

Secondary Rosso model for water activity

Metainformation of secondary growth models

SecondaryComparison class

Plot of the initial guess for growth under dynamic environmental condi...

Plot of the initial guess for growth under constant environmental cond...

StochasticGrowth class

Time to reach a given microbial count

Time for the population to reach a given size

TimeDistribution class

Trilinear growth model

Zwietering gamma model