Modelling of Population Growth
Generates functions for linear interpolation of environmental conditio...
biogrowth: Modelling of Population Growth
Calculates every gamma factor
Gamma factors for fitting secondary models
Visual check of an initial guess of the model parameters
Basic check of parameters for primary models
Basic checks of secondary parameters
Model definition checks for predict_stochastic_growth
Model comparison and selection for growth models
Model comparison and selection for secondary growth models
Secondary Cardinal Parameter (CPM) model
Baranyi growth model
Distribution of times to reach a certain microbial count
DynamicGrowth class
A helper to build the primary models
A helper to build the secondary models
Fit dynamic growth models
Fitting microbial growth
Fit primary growth models
Fit growth models using MCMC
Fitting growth models to multiple dynamic experiments
Fitting growth models to multiple dynamic experiments using MCMC
Fit secondary growth models
FitDynamicGrowth class
FitDynamicGrowthMCMC class
FitIsoGrowth class
FitMultipleDynamicGrowth class
FitMultipleGrowthMCMC class
FitSecondaryGrowth class
Full Ratkowsky model
A helper for making the plots
Residuals of dynamic prediction
Residuals of isothermal prediction
Residuals of multiple dynamic predictions
Residuals of secondary models
GlobalGrowthComparison class
GlobalGrowthFit class
GrowthComparison class
GrowthFit class
GrowthPrediction class
GrowthUncertainty class
Test of DynamicGrowth object
Test of FitDynamicGrowth object
Test of FitDynamicGrowthMCMC object
Test of FitIsoGrowth object
Test of FitMultipleDynamicGrowth object
Test of FitMultipleDynamicGrowthMCMC object
Test of FitSecondaryGrowth object
Test of GlobalGrowthFit object
Test of GrowthFit object
Test of GrowthPrediction object
Test of GrowthUncertainty object
Test of IsothermalGrowth object
Test of MCMCgrowth object
Test of StochasticGrowth object
Isothermal Baranyi model
Reparameterized Gompertz model
IsothermalGrowth class
Q0 from lag phase duration
Logistic growth model
Initial guesses for the secondary model of one factor
Initial guesses for fitting primary growth models
Initial guesses for the parameters of a secondary model
MCMCgrowth class
Growth under dynamic conditions
Prediction of microbial growth
Isothermal growth with parameter uncertainty
Isothermal microbial growth
Stochastic growth of MCMC fit
Deprecated isothermal growth with parameter uncertainty
Generic for calculating predictions with uncertainty from fits
Metainformation of primary growth models
Lag phase duration from Q0
Richards growth model
Metainformation of secondary growth models
SecondaryComparison class
Plot of the initial guess for growth under dynamic environmental condi...
Plot of the initial guess for growth under constant environmental cond...
StochasticGrowth class
Time to reach a given microbial count
Time for the population to reach a given size
TimeDistribution class
Trilinear growth model
Zwietering gamma model
Modelling of population growth under static and dynamic environmental conditions. Includes functions for model fitting and making prediction under isothermal and dynamic conditions. The methods (algorithms & models) are based on predictive microbiology (See Perez-Rodriguez and Valero (2012, ISBN:978-1-4614-5519-6)).