Tools for Microscopy Imaging
Binary segmentation in 3d
Computes moments from image objects
Permutation Test for cross-type nearest neighbor distances
Compute cross-type nearest neighbor distances
A function to compute the distance from spots to borders of classes
Apply filter to 3D images
Choose a folder interactively
Display an image stack
Intensity of a 3d Dataset or a Model
K-function cross-type in 3D
L-function cross-type in 3d
Mexican hat brush to use with filter2
Nearest neighbor distribution (D curve)
Title Find distance to next neighbour of a specific class
Find all distances to next neighbor of all classes
Segmentation of the background of 3D images based on classes
Title Plot nearest class distances
Read bitmap files
Read TIF file with classes
Read tif stacks
Segmentation of the background of 3D images based on automatic thresho...
Segmentation of 3D images using EM algorithms
Find spots based on threshold and minimum total intensity
Standardize images
Cross Tabulation and Table Creation (including empty classes)
Permutation Test for cross-type nearest neighbor distances
Writes image stack into a TIFF file. Wrapper for writeTIFF
Tools for 3D imaging, mostly for biology/microscopy. Read and write TIFF stacks. Functions for segmentation, filtering and analyzing 3D point patterns.
Useful links