plotModuleWeb function

plotModuleWeb

plotModuleWeb

This function takes an object of class moduleWeb and plots the modules found by function computeModules(...) onto the graph. UTF-8

plotModuleWeb(moduleWebObject, plotModules = TRUE, 
rank = FALSE, weighted = TRUE, displayAlabels = TRUE, 
displayBlabels = TRUE, labsize = 1, xlabel = "", ylabel = "", 
square.border = "white", fromDepth = 0, upToDepth = -1)

Arguments

  • moduleWebObject: An object of class "moduleWeb".
  • plotModules: If plotModules is true, modules are plotted onto the graph, otherwise only the graph itself is plotted.
  • rank: logical; if true, rows will be standardised for plotting, yielding a range from light to dark blue for each row; if false, values are ranged across the entire matrix. The latter is more faithful to the data, while the former makes lower levels more comparable, irrespective of marginal totals.
  • weighted: If weighted is true, the intensity of squares representing the edges corresponds with the edge weight, otherwise all squares representing existing edges have equal intensity.
  • displayAlabels: Row labels are plotted, iff displayAlabels is true.
  • displayBlabels: Column labels are plotted, iff displayBlabels is true.
  • labsize: labsize is the scalar factor with which the size of the plot labels can be changed.
  • xlabel: xlabel is the label for the x-axis.
  • ylabel: ylabel is the label for the y-axis.
  • square.border: Background color of area with squares.
  • fromDepth: Minimal depth of modules which should be plotted.
  • upToDepth: Maximal depth of modules which should be plotted. If upToDepth is smaller then fromDepth, all modules are plotted.

Returns

A plot window with appropriate size according to the dimensions of the web.

Author(s)

Rouven Strauss

See Also

See also function visweb.

Examples

## Not run:

data(small1976)

moduleWebObject = computeModules(small1976);
plotModuleWeb(moduleWebObject);
## End(Not run)
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