biplotEZ2.2 package

EZ-to-Use Biplots

alpha.bags

Create alpha bags

AoD.biplot

Calculate elements for the Analysis of Distance (AoD) biplot

AoD

Use the Analysis of Distance (AoD) method to construct the biplot

axes_coordinates

Calibrate Biplot Axes

axes

Format aesthetics for the biplot axes

biplot

First step to create a new biplot with biplotEZ

biplotEZ

biplotEZ: EZ-to-Use Biplots

CA.biplot

CA biplot

CA

Correspondence Analysis (CA) method

CATPCA

Categorical Principal Component Analysis

classification.biplot

classification biplot

classification

Classification biplot method

classify

Classify samples into classes

CLPs

Format aesthetics for the category level points

CLRs

Format aesthetics for the category level regions

CVA.biplot

Calculate elements for the CVA biplot

CVA

Perform Canonical Variate Analysis (CVA)

CVAlowdim

Construct additional dimensions when the dimension of the canonical sp...

density1D

Creates a kernel density in 1-dimension

density2D

Create a density in 2-dimensions

ellipses

Concentration ellipses (κ\kappa-ellipses)

extended.matching.coefficient

Extended matching coefficient

fit.measures

Compute measures of fit for the biplot.

interpolate

Interpolate supplementary points and variables to add to the biplot

legend.type

Format the legend for the biplot

means

Format aesthetics for the class or group means

newaxes

Format aesthetics for the supplementary (new) biplot axes

newsamples

Format aesthetics for the supplementary (new) biplot samples

PCA.biplot

Calculate elements for the PCA biplot

PCA

Perform Principal Components Analysis (PCA)

PCO.biplot

PCO biplot

PCO

Principal Coordinate Analysis (PCO) biplot method

plot.biplot

Generic Plotting function of objects of class biplot

prediction

Predict samples to display on the biplot

print.biplot

Generic print function for objects of class biplot

reflect

Reflect the biplot about a chosen axis

regress.biplot

Regression biplot

regress

Regression biplot method

rotate

Rotate the biplot a chosen amount of degrees

samples

Format aesthetics for the biplot samples

sqrtManhattan

Computes the square root of the Manhattan distance An example of a Euc...

summary.biplot

Generic summary function for objects of class biplot

translate_axes

Translate biplot axes

Provides users with an EZ-to-use platform for representing data with biplots. Currently principal component analysis (PCA), canonical variate analysis (CVA) and simple correspondence analysis (CA) biplots are included. This is accompanied by various formatting options for the samples and axes. Alpha-bags and concentration ellipses are included for visual enhancements and interpretation. For an extensive discussion on the topic, see Gower, J.C., Lubbe, S. and le Roux, N.J. (2011, ISBN: 978-0-470-01255-0) Understanding Biplots. Wiley: Chichester.

  • Maintainer: Sugnet Lubbe
  • License: MIT + file LICENSE
  • Last published: 2024-11-13