boa1.1.8-2 package

Bayesian Output Analysis Program (BOA) for MCMC

boa.acf

Autocorrelation Function

boa.batchMeans

Batch Means

boa.chain.add

Add MCMC Sequence

boa.chain.collapse

Concatenate MCMC Sequences

boa.chain.del

Delete MCMC Sequences

boa.chain.eval

Formulate New Parameter

boa.chain.gandr

Gelman and Rubin Convergence Diagnostics

boa.chain.import

Import MCMC Sequence

boa.chain.info

Information about MCMC Sequences

boa.chain

Session Lists of MCMC Sequences

boa.chain.reset

Reset MCMC Sequences

boa.chain.subset

Subset MCMC Sequences

boa.chain.support

Set Support for Parameters

boa.getiter

Extract Iterations

boa.getparms

Extract Parameters

boa.geweke

Geweke Convergence Diagnostics

boa.gewekePwr

Geweke Spectral Density Estimation

boa.handw

Heidelberger and Welch Convergence Diagnostics

boa.hpd

Highest Probability Density Interval

boa.importASCII

Import ASCII Data

boa.importBUGS

Import BUGS Data

boa.importMatrix

Import ASCII Data

boa.init

Start Session

boa.iter

Extract Iteration Numbers

boa.license

Licensing Information

boa.load

Load Session

boa.menu

Interactive BOA Menu

boa.par

Global Parameters

boa.pardesc

Global Parameters Descriptions

boa.plot.acf

Plot Autocorrelation Function

boa.plot.bandg

Plot Brooks and Gelman Multivariate Shrink Factors

boa.plot.close

Close Graphics Windows

boa.plot.density

Plot Density Functions

boa.plot.gandr

Plot Gelman and Rubin Shrink Factors

boa.plot.geweke

Plot Geweke Convergence Diagnostics

boa.plot.history

Plot Parameter Estimation Histories

boa.plot.open

Open Graphics Windows

boa.plot.par

Set Plotting Parameters

boa.plot

Plot Parameters in MCMC Sequences

boa.plot.title

Add Plot Title

boa.plot.trace

Plot Trace Histories

boa.pnames

Extract Parameter Names

boa.print.acf

Print Autocorrelation Functions

boa.print.cor

Print Correlation Matrices

boa.print.gandr

Print Gelman and Rubin Convergence Diagnostics

boa.print.geweke

Print Geweke Convergence Diagnostics

boa.print.handw

Print Heidelberger and Welch Convergence Diagnostics

boa.print.hpd

Print Highest Probability Density Intervals

boa.print.info

Print Information about MCMC Sequences

boa.print.par

Print Global Parameters' Descriptions and Current Values

boa.print.randl

Print Raftery and Lewis Convergence Diagnostics

boa.print.stats

Print Summary Statistics

boa.quit

Quit Session

boa.randl

Raftery and Lewis Convergence Diagnostics

boa.save

Save Session

boa.sortiter

Sort by Iteration Numbers

boa.sortparms

Sort by Parameter Names

boa.stats

Summary Statistics

boa.transform

Transform Variables

boa.version

Version Information

colVars

Column Variances

A menu-driven program and library of functions for carrying out convergence diagnostics and statistical and graphical analysis of Markov chain Monte Carlo sampling output.