bold1.3.0 package

Interface to Bold Systems API

b_sepFasta

Seperate sequences (fasta) from bold_seqspec output.

bold-deprecated

Deprecated functions in package bold.

bold-package

bold

bold_filter

Filter BOLD specimen + sequence data (output of bold_seqspec)

bold_get_attr

Get the error messages and parameters used for a request from a bold o...

bold_identify

Search for matches to sequences against the BOLD COI database.

bold_identify_parents-deprecated

Add taxonomic parent names to a data.frame

bold_identify_taxonomy

Add taxonomic parent names to a data set containing the process IDs of...

bold_seq

Search BOLD for sequences.

bold_seqspec

Get BOLD specimen + sequence data.

bold_specimens

Search BOLD for specimens.

bold_stats

Get BOLD stats

bold_tax_id-deprecated

Search BOLD for taxonomy data by BOLD ID.

bold_tax_id2

Search BOLD for taxonomy data by BOLD ID.

bold_tax_name

Search BOLD for taxonomy data by taxonomic name

bold_trace

Get BOLD trace files

Download source packageRead PDF manual

A programmatic interface to the Web Service methods provided by Bold Systems (<http://www.boldsystems.org/>) for genetic 'barcode' data. Functions include methods for searching by sequences by taxonomic names, ids, collectors, and institutions; as well as a function for searching for specimens, and downloading trace files.

  • Maintainer: Salix Dubois
  • License: MIT + file LICENSE
  • Last published: 2023-05-02

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