caper1.0.4 package

Anova and AIC tables for 'pgls' models.

Datasets used for benchmarking caper

Comparative analysis using the brunch algorithm.

The 'caic' S3 object class and methods

Anova and model checking methods for independent contrast models.

Diagnostic tools for independent contrasts models

Comparative analysis of phylogenetics and evolution in R (caper)

Create a clade matrix from a phylogeny

Identify tips descended from a node

Comparative dataset creation

Comparative analysis using the crunch algorithm.

Imbalance statistics using Fusco and Cronk's method.

Tree simulation with traits.

Comparative analysis using independent contrasts on species richness d...

Calculate and bootstrap phylogenetic diversity measurements.

Example dataset for the CAIC package

Generic model methods for 'pgls' models.

Likelihood profiles and confidence intervals for 'pgls' models.

Phylogenetic generalized linear models

Calculates the phylogenetic D statistic

Calculates the phylogenetic D statistic across clades within a phyloge...

Diagnostic plots for 'pgls' models.

Summarize a crunch, brunch or macrocaic analysis

Create a 2D or 3D variance-covariance matrix from a phylogeny