causalDisco0.9.5 package

Compute confusion matrix for comparing two adjacency matrices

Extract adjacency matrix from tpdag, cpdag, tpag or pag object

Convert adjacency matrix to graphNEL object

Compute average degree for adjacency matrix

Compare two tpdag or tskeleton objects

Compute confusion matrix for comparing two adjacency matrices

Test for vanishing partial correlations

Compute confusion matrix for comparing two adjacency matrices

Compute confusion matrix for comparing two adjacency matrices

List of edges in adjacency matrix

Convert essential graph to adjacency matrix

Evaluate adjacency matrix estimation

Evaluate adjacency matrix estimation

Evaluate adjacency matrix estimation

Evaluate adjacency matrix estimation

F1 score

Perform causal discovery using the FCI algorithm

False Discovery Rate

False Omission Rate

G1 score

Gaussian L0 score computed on correlation matrix

Get variables with a specific prefix (character method)

Get variables with a specific prefix (data.frame method)

Convert graphNEL object to adjacency matrix

Check for CPDAG

Check for PDAG

Generate Latex tikz code for plotting a temporal DAG, PDAG or PAG.

Compute maximal number of edges for graph

Number of different DAGs

Number of edges in adjacency matrix

Negative predictive value

Perform causal discovery using the PC algorithm

Plot partial ancestral graph (PAG)

Plot adjacency matrix with order information

Plot temporal partial ancestral graph (TPAG)

Plot temporal partially directed acyclic graph (TPDAG)

Plot temporal skeleton

Plot temporal data generating mechanism

Precision

Convert a matrix of probabilities into an adjacency matrix

Recall

Regression-based information loss test

Structural hamming distance between adjacency matrices

Simulate a random DAG

Simulate Gaussian data according to DAG

Specificity

Make a temporal adjacency matrix

Temporal Bayesian Dirichlet equivalent uniform (Score criterion)

Temporal Bayesian Information Criterion (Score criterion)

Perform causal discovery using the temporal FCI algorithm (TFCI)

Estimate the restricted Markov equivalence class using Temporal Greedy...

Perform causal discovery using the temporal PC algorithm (TPC)

Plot temporal graph via Latex