Finds RNASeq Source Tissues Using In Situ Hybridisation Data
Finding the most likely originating tissue(s) and developmental stage(...
Diagnostic plots to explore seqVsInsitu results
Calculates discovery probability by RNA in situ hybridisation given a ...
In situ discovery probability as a function of FPKM
Faster comparisons between mixed tissue-specific RNA sequencing data a...
Assign a prior probability to a combination of anatomical terms
Determine the most likely source(s) of a tissue-specific RNAseq datase...
Drosophila melanogaster embryo ventral nerve cord RNASeq coverage
Finds the most likely originating tissue(s) and developmental stage(s) of tissue-specific RNA sequencing data. The package identifies both pure transcriptomes and mixtures of transcriptomes. The most likely identity is found through comparisons of the sequencing data with high-throughput in situ hybridisation patterns. Typical uses are the identification of cancer cell origins, validation of cell culture strain identities, validation of single-cell transcriptomes, and validation of identity and purity of flow-sorting and dissection sequencing products.