cglasso2.0.7 package

Conditional Graphical LASSO for Gaussian Graphical Models with Censored and Missing Values

AIC.cglasso

Akaike Information Criterion

BIC.cglasso

Bayesian Information Criterion

cggm

Post-Hoc Maximum Likelihood Refitting of a Conditional Graphical Lasso

cglasso-internal

Internal Functions

cglasso-package

Conditional Graphical LASSO for Gaussian Graphical Models with Censore...

cglasso

Conditional Graphical Lasso Estimator

coef.cglasso

Extract Model Coefficients

ColMeans

Calculate Column Means and Vars of a datacggm Object

datacggm

Create a Dataset from a Conditional Gaussian Graphical Model with Cens...

dim.datacggm

Dimensions of a datacggm Object

dimnames.datacggm

Dimnames of a datacggm Object

event

Status Indicator Matrix from a ‘datacggm’ Object

fitted.cglasso

Extract Model Fitted Values

getGraph

Retrieve Graphs from a ‘cglasso2igraph’ Object

getMatrix

Retrieve Matrices ‘Y’ and ‘X’ from a ‘datacggm’ Object

hist.datacggm

Histogram for a datacggm Object

impute

Imputation of Missing and Censored Values

is.cglasso2igraph

Is an Object of Class cglasso2igraph ?

is.datacggm

Is an Object of Class datacggm ?

lower

Lower and Upper Limits from a datacggm Object

nobs.datacggm

Extract the Number of Observations/Responses/Predictors from a datacgg...

plot.cggm

Plot Method for a ‘cggm’ Object

plot.cglasso

Plot Method for ‘cglasso’ Object

plot.cglasso2igraph

Plot Method for a cglasso2igraph Object"

plot.GoF

Plot for ‘GoF’ Object

predict.cglasso

Predict Method for cglasso and cggm Fits

QFun

Extract Q-Function

qqcnorm

Quantile-Quantile Plots for a datacggm Object

rcggm

Simulate Data from a Conditional Gaussian Graphical Model with Censore...

residuals.cglasso

Extract Model Residuals

rowNames

Row and Column Names of a datacggm Object

select.cglasso

Model Selection for the Conditional Graphical Lasso Estimator

ShowStructure

Show Package Structure

summary.cglasso

Summarizing cglasso and cggm Fits

summary.datacggm

Summarizing Objects of Class ‘datacggm’

to_graph

Create Graphs from cglasso or cggm Objects

Conditional graphical lasso estimator is an extension of the graphical lasso proposed to estimate the conditional dependence structure of a set of p response variables given q predictors. This package provides suitable extensions developed to study datasets with censored and/or missing values. Standard conditional graphical lasso is available as a special case. Furthermore, the package provides an integrated set of core routines for visualization, analysis, and simulation of datasets with censored and/or missing values drawn from a Gaussian graphical model. Details about the implemented models can be found in Augugliaro et al. (2023) <doi: 10.18637/jss.v105.i01>, Augugliaro et al. (2020b) <doi: 10.1007/s11222-020-09945-7>, Augugliaro et al. (2020a) <doi: 10.1093/biostatistics/kxy043>, Yin et al. (2001) <doi: 10.1214/11-AOAS494> and Stadler et al. (2012) <doi: 10.1007/s11222-010-9219-7>.

  • Maintainer: Luigi Augugliaro
  • License: GPL (>= 2)
  • Last published: 2024-02-12