cheddar0.1-639 package

Analysis and Visualisation of Ecological Communities

NvMTriTrophicStatistics

N-versus-M tri-trophic statistics

AggregateCommunities

Aggregate communities

ApplyByClass

Apply by class

BodyMassB

Body-mass bins

cheddar

Analysis and visualisation of ecological communities

CollectionApply

Collection apply

CollectionCPS

Collection community properties

CollectionNPS

Collection node properties

CollectionTLPS

Collection trophic-link properties

Community

Community

CommunityCollection

Collections of communities

CommunityHas

Community has property?

CommunityPropertyNames

Names of community properties

CP

Single community properties

CPS

Community properties

TrophicLinkPropertyNames

Trophic link property names

Degree

Node degree

DegreeDistribution

Node degree distribution

Intervality

Food web Intervality

IsCannibal

Cannibalistic nodes

LinearRegressionByClass

Linear regression by class

LoadCollection

Loading and saving CommunityCollection objects

NvMConvexHull

NvMConvexHull

LoadCommunity

Loading and saving Community objects

LumpNodes

Lump nodes

LumpTrophicSpecies

Lump trophic species

NodeConnectivity

Node connectivity

NvMLinearRegressions

NvMLinearRegressions

NodeMNUtilities

Body mass, numerical abundance and biomass abundance

NodeNameIndices

Node name indices

NodePropertyNames

A vector of names of node properties

NP

Single node properties

NPS

Node properties

NumberOfNodes

Number of nodes

NumberOfTrophicLinks

Number of trophic links

NvMTriTrophicTable

N-versus-M tri-trophic statistics

Omnivory

Omnivory

OrderCollection

Order a collection of communities

OrderCommunity

Order a community

PlotAuppervAlower

Plot upper-versus-lower link angles

PlotCircularWeb

Plot circular web

PlotHelpers

Plot helpers

PlotNPS

Plot node properties

PlotNPSDistribution

Plot distributions of node properties

PlotPyramid

Pyramid plots

PlotRankNPS

Plot rank of node properties

PlotSpectrum

Spectrum plots

PlotTLPS

Plot trophic-link properties

PlotWagonWheel

Plot wagon wheel

PlotWebByLevel

Plot web by level

PredationMatrix

Predation matrix

PredationMatrixToLinks

Predation matrix to trophic links

QuantitativeDescriptors

Quantitative descriptors

RemoveCannibalisticLinks

Remove cannibalistic trophic links

RemoveIsolatedNodes

Remove isolated nodes

RemoveNodes

Remove nodes

ResourceLargerThanConsumer

Resource larger than consumer

ResourcesByNode

Resources and consumers of nodes

ShortestPaths

Path lengths

SiteBySpeciesMatrix

Community collection site by species matrix

subset.CommunityCollection

A subset of a collection of communities

ThreeNodeChains

Three-node chains

TLP

A single trophic-link property

TLPS

Trophic-link properties

TrophicChains

Trophic chains

TrophicChainsStats

Trophic chains statistics

TrophicLevels

Trophic levels

TrophicSimilarity

Trophic similarity

TrophicSpecies

Trophic species

Provides a flexible, extendable representation of an ecological community and a range of functions for analysis and visualisation, focusing on food web, body mass and numerical abundance data. Allows inter-web comparisons such as examining changes in community structure over environmental, temporal or spatial gradients.