Analysing Chemodiversity of Phytochemical Data
Calculate beta diversity
Calculate various diversity measures
Calculate a diversity profile
chemodiv: A package for analysing phytochemical diversity
Check data formatting
Plot chemodiversity
Calculate compound dissimilarities
Generate a molecular network with some properties
Plot molecular networks
Generate NPClassifier classification
Quickly calculate or plot chemodiversity
Calculate sample dissimilarities
Quantify and visualise various measures of chemical diversity and dissimilarity, for phytochemical compounds and other sets of chemical composition data. Importantly, these measures can incorporate biosynthetic and/or structural properties of the chemical compounds, resulting in a more comprehensive quantification of diversity and dissimilarity. For details, see Petrén, Köllner and Junker (2023) <doi:10.1111/nph.18685>.