Standard TLGs for Clinical Trials Reporting
AEL01_NOLLT Listing 1 (Default) Glossary of Preferred Terms and Inve...
AEL02 Listing 1 (Default) Listing of Adverse Events.
AEL03 Listing 1 (Default) Listing of Serious Adverse Events.
aet01_aesi Layout
AET01_AESI Table 1 (Default) Adverse Event of Special Interest Summa...
aet01 Layout
AET01 Table 1 (Default) Overview of Deaths and Adverse Events Summar...
AET02 Table 1 (Default) Adverse Events by System Organ Class and Pre...
aet03 Layout
chevron package
CML02A_GL Listing 1 (Default) Concomitant Medication Class Level 2, ...
AET03 Table 1 (Default) Advert Events by Greatest Intensity Table 1.
aet04 Layout
AET04 Table 1 (Default) Adverse Events by Highest NCI CTACAE `AE...
AET05_ALL Table 1 (Default) Adverse Event Rate Adjusted for Patient-...
aet05 Layout
AET05 Table 1 (Default) Adverse Event Rate Adjusted for Patient-Year...
aet10 Layout
AET10 Table 1 (Default) Most Common (xx%) Adverse Events Preferred T...
Analyze with defined precision
Analyze skip baseline
Get Arguments List
Check variable only has one unique value.
Check variable is of correct type
Check variables are of same levels
Check whether var is valid
Check variables in a data frame are valid character or factor.
cfbt01 Layout
CFBT01 Change from Baseline By Visit Table.
Check that all names are among column names
Check that at least one name is among column names
chevron_t
CMT02_PT Table 1 (Default) Concomitant Medications by Preferred Name...
Helper function to convert to months if needed
Count Children
Count or summarize by groups
Count patients recursively
COXT01 Layout
COXT01 (Default) Cox Regression Model Table.
DST01 Table 1 (Default) Patient Disposition Table 1.
dtht01 Layout
DTHT01 Table 1 (Default) Death Table.
Dummy template.
CMT01A Concomitant Medication by Medication Class and Preferred Name...
EXT01 Exposure Summary Table.
Formatting of date
FSTG01 Subgroup Analysis of Best Overall Response.
FSTG02 Subgroup Analysis of Survival Duration.
Fuse list elements
General Argument Name Convention
Get grade rule
Get page by value
Get Section dividers
Subset Arguments and Merge
Get a harmonious value of horizontal justification for x axis
Get a harmonious value of vertical justification for x axis
List of gg object
Theme for Chevron Plot
List of grob object
Decimal formatting
Helper function to add a column split if specified
Helper function to add a row split if specified
KMG01 Kaplan-Meier Plot 1.
pdt02 Major Protocol Deviations Related to Epidemic/Pandemic Table.
Post process
Pre process
Print Arguments
Print list
Proportion layout
Objects exported from other packages
Creates NULL Report
rmpt01 Layout
RMPT01Duration of Exposure for Risk Management Plan Table.
rmpt03Duration of Exposure for Risk Management Plan Table.
RMPT04Extent of Exposure by Ethnic Origin for Risk Management Plan T...
RMPT05 Extent of Exposure by Race for Risk Management Plan Table.
rmpt06 Layout
RMPT06 Table 1 (Default) Seriousness, Outcomes, Severity, Frequency ...
rspt01 Layout
RSPT01 Binary Outcomes Summary.
Run the pipeline
Summary factor allowing NA
Create Script for TLG Generation
Set Section Dividers
Prune table up to an ElementaryTable
Count or summarize by groups
Standard Main Listing Function
Standard Post Processing
Summarize variables allow NA
ttet01 Layout
TTET01 Binary Outcomes Summary.
Retrieve labels for certain variables
VST01 Vital Sign Results and change from Baseline By Visit Table.
VST02 Vital Sign Abnormalities Table.
VST02 Vital Sign Abnormalities Table.
vst02_1 Layout
Yes/No rule in title case
Obtain levels from vector
Main
MHT01 Medical History Table.
Missing rule
MNG01 Mean Plot Graph.
Modify character
No Coding Available rule
Obtain value from a vector
Occurrence Layout
Outcome Rule
pdt01 Layout
COXT02 Multi-Variable Cox Regression Model Table.
Concatenate Site and Subject ID
Deparse print
dmt01 Layout
DMT01 Table 1 (Default) Demographics and Baseline Characteristics Ta...
Execute a function call
Dose Change Rule
dst01 Layout
pdt01 Major Protocol Deviations Table.
EGT01 ECG Parameters and Change from Baseline By Visit Table.
EGT02 ECG Abnormalities Table.
EGT02_2 ECG Abnormalities Table.
egt02 Layout
egt03 Layout
pdt02 Layout
EGT03 Shift Table of ECG Interval Data - Baseline versus Minimum or ...
EGT05_QTCAT Layout
EGT05_QTCAT ECG Actual Values and Changes from Baseline by Visit Tab...
Empty rule
Execute function with given arguments
Expand list to each split
ext01 Layout
LBT01 Lab Results and Change from Baseline by Visit Table.
lbt04 Layout
LBT04 Laboratory Abnormalities Not Present at Baseline Table.
lbt05 Layout
LBT05 Table 1 (Default) Laboratory Abnormalities with Single and Rep...
lbt06 Layout
LBT06 Table 1 (Default) Laboratory Abnormalities by Visit and Baseli...
lbt07 Layout
LBT07 Table 1 (Default) Laboratory Test Results and Change from Base...
lbt14 Layout
LBT14 Laboratory Test Results Shift Table – Highest NCI-CTCAE Grad...
LBT15 Laboratory Test Shifts to NCI-CTCAE Grade 3-4 Post-Baseline ...
Format for Chevron Listings
Provide standard tables, listings, and graphs (TLGs) libraries used in clinical trials. This package implements a structure to reformat the data with 'dunlin', create reporting tables using 'rtables' and 'tern' with standardized input arguments to enable quick generation of standard outputs. In addition, it also provides comprehensive data checks and script generation functionality.
Useful links