bg-class function

Class "bg"

An S4 class containing the output bg.max function. class

Returns

An object containing result of the bg.max function.

Slots

• .Data:: "matrix" which columns represent respectively cycle number, raw fluorescence data, first derivative and second derivative.
• bg.start:: "numeric" value representing start of the background range.
• bg.stop:: "numeric" value representing end of the background range.
• bg.corr:: "numeric" a value which helps to tweak on the suggested background value of bg.max.
• fluo:: "numeric" a value of fluorescence at the end of amplification.
• amp.stop:: "numeric" value representing end of the amplification .

Methods

• plot: signature(x = "bg"): plots background information. See plot.bg
• show: signature(object = "bg"): prints only .Data slot of the object.
• summary: signature(object = "bg"): prints information about object prettier than show and allows easy access to some slots. See summary.bg

Author(s)

Stefan Roediger, Michal Burdukiewicz

See Also

bg.max, plot.bg, summary.bg

Examples

res <- AmpSim(cyc = 1:40, Cq = 25)
tmp <- bg.max(res)
summary(tmp)
plot(tmp)