Chromatographic File Converter
Call 'rainbow' parsers Parse 'Agilent' or 'Waters' files with rainbow ...
Configure 'OpenChrom' parser
Configure python environment
Extract metadata
Read 'Agilent ChemStation' CSV files
Read 'Agilent ChemStation' MS file.
Read 'Agilent ChemStation' report files.
Read 'Agilent ChemStation' DAD files
Read 'Chromeleon' ASCII files
Read Chromatograms
Read 'Lumex' MDF
Read 'Shimadzu' ASCII
Read 'Shimadzu' LCD 2D data
Read 'Shimadzu' LCD 3D data
Converter for 'Agilent ChemStation' UV files
Call Entab
Parse files with OpenChrom
Read files from 'Agilent ChemStation' .D directories
Read 'Agilent' DX files
Read 'Allotrope Simple Model' (ASM) 2D chromatograms
Read CDF
Read 'Agilent ChemStation' CH files
Read mzML files
Read peak lists
Read 'Shimadzu' GCD
Read 'Shimadzu' LCD
Read 'Shimadzu' QGD files
Read ThermoRaw
Read 'Varian' peak list.
Read 'Varian' SMS
Read 'Waters' ASCII (.arw)
Read 'Waters' RAW
Converter for 'Agilent MassHunter' UV files
Write ANDI chrom CDF file from chromatogram
Write chromatograms
Write mzML
Reads chromatograms from binary formats into R objects. Currently supports conversion of 'Agilent ChemStation', 'Agilent MassHunter', 'Shimadzu LabSolutions', 'ThermoRaw', and 'Varian Workstation' files as well as various text-based formats. In addition to its internal parsers, chromConverter contains bindings to parsers in external libraries, such as 'Aston' <https://github.com/bovee/aston>, 'Entab' <https://github.com/bovee/entab>, 'rainbow' <https://rainbow-api.readthedocs.io/>, and 'ThermoRawFileParser' <https://github.com/compomics/ThermoRawFileParser>.
Useful links