Fetch and Explore the Cornell Lab of Ornithology Open Tree of Life Avian Phylogeny
Extract a complete or pre-pruned phylogeny from the clootl datastore
Download the AvesData full repository
Identify contributing studies
Extract a cloud of trees from the complete Avian Phylogeny for a set o...
Set path to Aves Data folder
Load a bird taxonomy into the R environment
Helper to load a tree into the R environment
Fetches the Cornell Lab of Ornithology Open Tree of Life (clootl) tree in a specified taxonomy. Optionally prune it to a given set of study taxa. Provide a recommended citation list for the studies that informed the extracted tree. Tree generated as described in McTavish et al. (2024) <doi:10.1101/2024.05.20.595017>.