coloc5.2.3 package

annotate susie_rss output for use with coloc_susie

Internal function, approx.bf.estimates

Internal function, approx.bf.p

binomial to linear regression conversion

check alignment

check_dataset

Colocalisation tests of two genetic traits

Fully Bayesian colocalisation analysis using Bayes Factors

Coloc data through Bayes factors

Bayesian colocalisation analysis with detailed output

Post process a coloc.details result using masking

Coloc with multiple signals per trait

run coloc using susie to detect separate signals

run coloc using susie to detect separate signals

combine.abf

generate conditional summary stats

estgeno1

Pick out snp with most extreme Z score

trim a dataset to central peak(s)

trim a dataset to only peak(s)

Bayesian finemapping analysis

Finemap data through Bayes factors

Finemap multiple signals in a single dataset

logbf 2 pp

logdiff

logsum

find the next most significant SNP, conditioning on a list of sigsnps

find the next most significant SNP, masking a list of sigsnps

plot a coloc_abf object

plot a coloc dataset

print.coloc_abf

process.dataset

Run susie on a single coloc-structured dataset

Estimate trait variance, internal function

Prior sensitivity for coloc

subset_dataset

Var.data

Var.data