colocr0.1.1 package

Conduct Co-Localization Analysis of Fluorescence Microscopy Images

colocr

colocr: Conduct Co-localization Analysis of Microscopy Images.

colocr_app

Run the shiny App

dot-intensity_get

Get pixel intensities

dot-labels_add

Label regions of interest

dot-manders

Calculate Marnders Overlap Coefficient

dot-pearson

Calculate Pearson's Correlation Coefficient

image_load

Load images from files

reexports

Objects exported from other packages

roi_check

Show pixel intensities

roi_select

Select regions of interest

roi_show

Show the selected regions of interest

roi_test

Test Co-localization

Download source packageRead PDF manual

Automate the co-localization analysis of fluorescence microscopy images. Selecting regions of interest, extract pixel intensities from the image channels and calculate different co-localization statistics. The methods implemented in this package are based on Dunn et al. (2011) <doi:10.1152/ajpcell.00462.2010>.

  • Maintainer: Mahmoud Ahmed
  • License: GPL-3
  • Last published: 2020-05-08

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