corHMM2.8 package

Hidden Markov Models of Character Evolution

ancRECON

Ancestral state reconstruction

ConvertPhangornReconstructions

Convert phangorn reconstruction to a vector

corDISC

Correlated evolution binary traits

corHMM

Hidden Rates Model

fitCorrelationTest

Test for correlation

getFullMat

Combines several rate class index matrices

getRateMat4Dat

Produce an index matrix and legend from a dataset

makeSimmap

Simulate a character history

plotMKmodel

Plot a Markov model

plotRECON

Plot ancestral state reconstructions

rayDISC

Evolution of categorical traits

Download source packageRead PDF manual

Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.

  • Maintainer: Jeremy Beaulieu
  • License: GPL (>= 2)
  • Last published: 2022-06-13